Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01697 ATGGGTGGGTATAACAATGGCCATGAACAACAAAGAAGGTTTGCCATTCTTGGCATCTCTTCAATCCTCCTTGTGGCTATGGTGCCTATAGCATTAGGTTTAAACCAAGAAGGTGGAGCTAATGCAGAAGCAAATAATGTCAATGTGTTAAACACAAAGGCTAACGGAGAATCGTTTTGTCAATCAACACAATACCAAGATGCATGCAAGAAAAGCCTTGGGAATCAACTTTTTGTAGCCACAGACCCAAAGAAGCTAGTTGAAGCTGGGTTCAATGCCACAATAGTGGAACTTTCAAAACACATAAACAATGCCACCCTTTATAAAGAGATAGCCAAAAATGACATGGCAAAGCAAGCTATGGATATTTGTACGGAAGTGTTGGACTATTCAGTTGATGCCATTATCAAATCTACTGAGGTGTTGAACAAGTTTGATCTGGAAACGTTGAGTCAGCACATTTATGACCTTAAGGTTTGGCTCACGGGGAGTATTTCTCACCAAACTACTTGCTTGCAAGGCTTTGAGAACGCAAAAACACAAGTTGGTGGCGCAATGCTTCAGGTTTTGAGTGCCTCTATGGAGCTTAGTAGCAATGCATTGGATATGACCAACATAATCACTGGATATCAAAAAGGTAACCAAGCAAATAAAATTGCCAATAGGAGACTTCTCACTAATGAAGCAACAAATGAGAATGGTTTCCTCTCGTGGGTGAATGAAGGGAATCGACGCTTTCTTGAGGCGGCTGCAACTGGGAGTGCTAAGCCCAATGCAGTTGTGGCCCAAGATGGGTCTGGCCAATTTAAAACACTCAATGATGCTCTCAAGACTGTTCCCCCCAATAATGCTAAACCTTTTGTCATTCAAGTCAAGGCTGGTGTGTACAAAGAAACTGTGAATGTGGCCAAGGGGATGACCCATGTCACGGTTATTGGAGATGGTCCTACAAAAACTACATTCACTGGCAGTTTAAATGTTGTTGATGGAGTCTTAACTTACAACACTGCTACCTTTGGTGTTCATGGTGCAAACTTCATGGCAAAAGATATTGGAATTGAAAACACAGCAGGGTCTGTAAAACAACAAGCAGTGGCACTTCTAGTAGCAGCAGACCAAGCTGTGTTCCATAATTGCCTTATTGACGGATTCCAAGATACCCTTTTTGCTGAATCCCAACGCCAATTCTATCGTGATTGCACCATTAAAGGCACCATTGACTTTATCTTTGGGGATGCCGTTGGAGTGTTCCAAAGCTGCACACTAGTTGCAAAAGAACCTTTACACGGAGCCCGAAGCTTAGTGACAGCTGGTGGTAGAATAAAAGAAAATAGTCCTAGTGCCCTTGTGTTCCAAAGCTGCAACATCATGGGGGAACCCAAAGTGCTTAGCGCAAATCCTAAGATAGCACTTCTTGGAAGGCCATGGAAGCCATACTCTAAGGTGGTGTTCATGGACTCTCAAATTGATGGTTCCTTTGCCCCAGAAGGGTATGAGGAATTTGCTTCAAATTCATTCAAAGAAACATGTTTATATTATGAGTATAATAACAAAGGCGCTGGTGCTGTCACAACGGGTAGAGTTAAATGGAAAGGTGTTAAGACTATAACCGCTACCGAAGCAGCTGATTATTATCCTGGGAAGTTCTTTGAACTCGCTAATTCATCATCAAGTGATTCTTGGATCGTTAATTCTGGGGTACCCTACTCGCTTGGCCCTATCAGTGGTGCAGGTCCCAAAGCCTCAGCCTAA 1752 0.4281 MGGYNNGHEQQRRFAILGISSILLVAMVPIALGLNQEGGANAEANNVNVLNTKANGESFCQSTQYQDACKKSLGNQLFVATDPKKLVEAGFNATIVELSKHINNATLYKEIAKNDMAKQAMDICTEVLDYSVDAIIKSTEVLNKFDLETLSQHIYDLKVWLTGSISHQTTCLQGFENAKTQVGGAMLQVLSASMELSSNALDMTNIITGYQKGNQANKIANRRLLTNEATNENGFLSWVNEGNRRFLEAAATGSAKPNAVVAQDGSGQFKTLNDALKTVPPNNAKPFVIQVKAGVYKETVNVAKGMTHVTVIGDGPTKTTFTGSLNVVDGVLTYNTATFGVHGANFMAKDIGIENTAGSVKQQAVALLVAADQAVFHNCLIDGFQDTLFAESQRQFYRDCTIKGTIDFIFGDAVGVFQSCTLVAKEPLHGARSLVTAGGRIKENSPSALVFQSCNIMGEPKVLSANPKIALLGRPWKPYSKVVFMDSQIDGSFAPEGYEEFASNSFKETCLYYEYNNKGAGAVTTGRVKWKGVKTITATEAADYYPGKFFELANSSSSDSWIVNSGVPYSLGPISGAGPKASA 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01697 583 Gene3D - 255 574 IPR012334 -
Cca08g01697 583 PANTHER PECTINESTERASE 8 577 - -
Cca08g01697 583 ProSitePatterns Pectinesterase signature 2. 402 411 IPR033131 -
Cca08g01697 583 Pfam Pectinesterase 258 549 IPR000070 GO:0030599|GO:0042545
Cca08g01697 583 SUPERFAMILY Pectin lyase-like 255 570 IPR011050 -
Cca08g01697 583 SMART PMEI_2 51 203 IPR006501 GO:0004857
Cca08g01697 583 Pfam Plant invertase/pectin methylesterase inhibitor 58 203 IPR006501 GO:0004857
Cca08g01697 583 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 58 208 IPR035513 -
Cca08g01697 583 TIGRFAM PME_inhib: pectinesterase inhibitor domain 57 207 IPR006501 GO:0004857
Cca08g01697 583 Gene3D Invertase/pectin methylesterase inhibitor family protein 54 207 IPR035513 -
Cca08g01697 583 CDD PMEI-like_3 58 209 - -
Cca08g01697 583 PANTHER PECTINESTERASE 8 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01697 Cca-Chr8 48745326 48747747 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01697 3 576 Carbohydrate Esterase AT3G05610 39.378 1.44e-153 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01697 K01051 - gmx:100785214 730.324