Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01695 ATGGCTCAAGACAGAAACCAAAGCGATGCATTCACACGCAGATTCAACCAGAATCCAAACCCTAAACCCCAAGACTTCGACGCCAAAGGCTACAGCCTCAGCGGCAAAATCATGCTCTCCGCGATAATCCTCCTCTTCTTCGTCGTCCTCGTCATGCTCTGCCTCCACATATACGCGCGCTGGTAcctccgccgcgcgcgccgccgccacctccgccgtatccgccgcacgcagctcgtcttccacaacgacgctgtccaccccgccgccgtcccccgcggcctcgacgccgccgTGCTCGCCTCGCTCCCCGTCTTCTCCTACGACCCCAAGGCCCACCCGGAAAACGCGCCGGAATGCGCGGTGTGTTTGTCGGAGTTCGAACCGGGCGAACCGGGTCGGGTCTTGCCCAAGTGTAACCACAGCTTCCACTCCGAATGCATCGACATGTGGTTCCACTCGCACGACACGTGTCCGTTGTGTCGCGCCCCGGTTGAGCCCCCGCCCGAACCGGAAGTGGTGATAATAATCCGCGAATCGGAACCCGAACCGGGAACCGGTTCGGGCCCTTTTGAGGGTGCGAACCGGAGCGGTTCTTCTTCGGTTGGGGAGAGGAGGAAGCCTTCGTTGGTTGGCGTGAGCGTCGAGGTGCCTCCGAGGGACGAGTCGTCGGGTTTCGACTCGCCCTCGACTCAGTCGGCGTTTCGGTCGCCGATGAGTCGCATGTTGTCGTTCACGAGGATGCTCAGCAGGGAAAGAAAGGGGGGCGTGTCGCCGTCGTCGTGCGGTGGCGCTTGTAGCTCCGCGGCGGAGTCTGGCGCGGAGCGAGGTGGGCGAGAGGAGACTCAGTGA 852 0.5293 MAQDRNQSDAFTRRFNQNPNPKPQDFDAKGYSLSGKIMLSAIILLFFVVLVMLCLHIYARWYLRRARRRHLRRIRRTQLVFHNDAVHPAAVPRGLDAAVLASLPVFSYDPKAHPENAPECAVCLSEFEPGEPGRVLPKCNHSFHSECIDMWFHSHDTCPLCRAPVEPPPEPEVVIIIRESEPEPGTGSGPFEGANRSGSSSVGERRKPSLVGVSVEVPPRDESSGFDSPSTQSAFRSPMSRMLSFTRMLSRERKGGVSPSSCGGACSSAAESGAERGGREETQ 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01695 283 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 167 IPR013083 -
Cca08g01695 283 CDD RING-H2_EL5_like 119 162 - -
Cca08g01695 283 MobiDBLite consensus disorder prediction 181 283 - -
Cca08g01695 283 SUPERFAMILY RING/U-box 100 168 - -
Cca08g01695 283 MobiDBLite consensus disorder prediction 224 244 - -
Cca08g01695 283 MobiDBLite consensus disorder prediction 1 26 - -
Cca08g01695 283 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 28 173 - -
Cca08g01695 283 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Cca08g01695 283 MobiDBLite consensus disorder prediction 1 23 - -
Cca08g01695 283 Pfam Ring finger domain 119 162 IPR001841 -
Cca08g01695 283 SMART ring_2 120 161 IPR001841 -
Cca08g01695 283 PANTHER RING-H2 FINGER PROTEIN ATL64 28 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01695 Cca-Chr8 48717787 48718638 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01695 16 280 Rapid Response to Elicitors AT3G16720 48.852 9.83e-68 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01695 - - gsj:114368044 293.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01695 08 48717787 48718638 Cca08g01695 08 48717787 48718638 ECH
Cca11g02753 11 54904417 54905372 Cca08g01695 08 48717787 48718638 PCT