Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01677 ATGGAAGGCAACAAGGACGAAGCATTGCGCTGCGTCCGCATCGCCCAGGAAGCCATCGCTTCGGGGAACAAAGAACGCGCCCTCAAATTCCTCACAATCGCGCGCCGCCTCAACCGCGATTTGCCCCTCCAATCGCTCCTCGACACGTGTCAccgcctcgactcccgctcctcctccgccgccgccgccgccgcgccggccgacgcgccctccccgccgcGCGAGGTCAGGAATAATTACACCGAAGAGAACGTTAACCTGATTAGGGAAATCAAATCGAAGAGCGATTACTACGCTATTCTTGGATTAGAGAAAAACTCCTCCGTCGAAGAGATTCGAAAGGCTTATAGGAAACTCTCGCTCAAGGTTCATCCCGATAAGAACAAAGCTCCTGGCTCTGAAAACGCCTTCAAGAAGGTTTCCAAGGCTTTCAAGTGCTTGAGCGACGATGGTTCTAGAAGGATCTACGACCAGACCGGCACGCTCCACGAATTCGACAACTCCGAGGTCAACTCTTTCCGACGCCGGAGAAGAAGAGCCACGGCGACGACAACGACGCGGGATTTCTTCGACGAAGAGTTCGACCCCGACGAGATTTTCCGAGCGTTCTTCGGCCACTCCGACGTGTTTGGGCGAAACCACGTTTACAGAGGCCGCGGAATGGGGAACCAGCACAACCAGCGGCACGAGGTCAACGCTGGATCGGGTGGGAGGCACCACAACGTGATGCTTTTGATTCAGCTTTTGCCGTTTTTGATCATTGTGCTGCTTGCGTACTTGCCGTTCTCCGACCCGGAGTATTCCCTGCACAAGCATTATGCTTACCAGGTTCCCAAGACCACGGCGCAGCACGGGGTTCAGTTCTTCGTGAAATCGGCGGCGTTTGAGGCCAGGTACCCGCCGGGGAGCGATGCTCGGAGGGCGGTTGAGGAGAGTGTGGTGAAGGATTATAGGAACATGCTTCGGAGGTATTGCCAGGTGGAGATGCAGAGACGGAGCTGGAATAGGAACCTGCCTGCTCCTCACTGTGATAAGCTCAAGAGCATTGCTGGGGTGGCGTGA 1062 0.5104 MEGNKDEALRCVRIAQEAIASGNKERALKFLTIARRLNRDLPLQSLLDTCHRLDSRSSSAAAAAAPADAPSPPREVRNNYTEENVNLIREIKSKSDYYAILGLEKNSSVEEIRKAYRKLSLKVHPDKNKAPGSENAFKKVSKAFKCLSDDGSRRIYDQTGTLHEFDNSEVNSFRRRRRRATATTTTRDFFDEEFDPDEIFRAFFGHSDVFGRNHVYRGRGMGNQHNQRHEVNAGSGGRHHNVMLLIQLLPFLIIVLLAYLPFSDPEYSLHKHYAYQVPKTTAQHGVQFFVKSAAFEARYPPGSDARRAVEESVVKDYRNMLRRYCQVEMQRRSWNRNLPAPHCDKLKSIAGVA 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01677 353 ProSiteProfiles dnaJ domain profile. 96 160 IPR001623 -
Cca08g01677 353 PANTHER CHAPERONE PROTEIN DNAJ 49 1 349 - -
Cca08g01677 353 CDD DnaJ 96 149 IPR001623 -
Cca08g01677 353 PANTHER AT29763P-RELATED 1 349 - -
Cca08g01677 353 Gene3D DnaJ domain 92 215 IPR036869 -
Cca08g01677 353 PRINTS DnaJ domain signature 98 116 IPR001623 -
Cca08g01677 353 PRINTS DnaJ domain signature 116 131 IPR001623 -
Cca08g01677 353 PRINTS DnaJ domain signature 132 152 IPR001623 -
Cca08g01677 353 Pfam Domain of unknown function (DUF1977) 263 333 IPR015399 -
Cca08g01677 353 Pfam DnaJ domain 96 157 IPR001623 -
Cca08g01677 353 SUPERFAMILY Chaperone J-domain 92 209 IPR036869 -
Cca08g01677 353 SMART dnaj_3 95 152 IPR001623 -
Cca08g01677 353 MobiDBLite consensus disorder prediction 58 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01677 Cca-Chr8 48480787 48486029 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01677 97 157 C2H2 Transcription Factor Family AT1G74250 43.284 4.52e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01677 K09518 - gmx:100820432 521.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01677 08 48480787 48486029 Cca08g01677 08 48480787 48486029 ECH