Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01671 ATGATTTATCTAAGTTTAACGTCACACCATTCGAACATGtcttcttcttcttcttcttttgcttcaccttcATGGCTTACTTCCCCCTTATGTTCCTCTTTGGACATAGATTCATCTTCCCCTTCATCACAATTCCTACTTCAGTGGCTAAGGTTCATCTTCCTATCTCCATGTCCCCAACGACTTCTTCTTTCAGCCCTTGATCTCATCTTCTTGCTCTCTCTCTTAGCCTTCGCAGCTCACAAACTCTATTCTCGGTTCACTTTCAATACCAACTCCACCATCACCAAACCCCTTCTGCAAGACAAAGACTCTGACTACAAAGTCACCTTGTGGTTCAAACTACCCTTCTTGGTAACCACCCTTTTGGCCACAGCTTACACGGTTCTAGCCATCTTGGCCTTCACTCAAACCAACTTTGCTTCATGGAAACTAATAGAGGCACTGTTTCGGGTCTTTCAAGCAATAGCCAACATAGTGGTTGTGATCCTAATGGTTCACGAGAAGAAGTTCAAAGCTGCAAAGCACCCTTTATCTCTGAGAATCTATTGGATGGCGAACTTGGTGGTTTCATGCTTGTTTGCTACTTCAGCCATTGTTCGCTTGGTAACTGTTGATGGAGCGAGGTTGGAGATTAGTTTGAGAGTGGATGATGTATTCTCGTTGGTCAATCTTCCATTATCTGCGTTCCTTTTCTTGGTAGCAATGAAAGGGTCAACGGGGATTCAAGTGATTAGAATTTCTGATGTAGTGAGAGCATATCAGTGCCTTTCCAATGACAGAACTTTGAGTCCTTATGCCTATGCTTCGTTTTTGTCCAAAACAGTGTGGTTTTGGATGAACCCTTTGCTGAATAGAGGGTACAAAACACCCCTCAAGCTTGAAGATGTGCCATCTCTCCCTATTGAATTCCGAGCAGAAAAGATGTCAGAACTTTTCCAAAGCAATTGGCCAAAGCCAGAGGACAGCAGCAAGCACCCGGTTGGACTGACCTTGTTTAGATCCTTCTGGAAGCACATAGCCTTCACTGGCTTCCTTGCAGTTATAAGGCTCGCGGTTATGTACATTGGTCCAATGCTTATTCAGAGTTTCGTTGACTTCACCTCAAGGGAAAACAGCACTCCCTATGAAGGCCTTGTTCTGATACTCATCCTGTATTTGGCAAAATCAGTTGAGGTCCTCAGCGTGCACCAGTTCAATTTCCACTCTCAGAAACTAGGCATGCTCATTCGCTCCAGCATCATCACTTCTGTGTACAAAAAGGGTTTGAGACTCTCAAGTTCTTCAAGGCAAACTCATGGCACTGGCCAGATTGTGAATCACATGGCTGTTGATGCACAACAACTCTCAGATTTGATGATGCAGTTTCACCCCATATGGTTGATGCCACTGCAAGTAGCAGCAGCTTTAGGCCTTATTTATAACTATGTTGGCTTGTCCGCGCTTGCAGCACTGCTTGGAACCACTTTGGTGTTTATTTTCACTCTATTTCGCACCAAGAAGAGCAACAGCTTCCAGTTCAGGATAATGACGAGCCGTGACTTGAGGATGAAGGCAACGAATGAGTTGCTCAACAACATGCGTGTCATCAAGTTCCAAGCGTGGGAAGAGTACTTTGGCAATAAGATTCAACAGTTTCGCGAAGCCGAACATGGTTGGATTGGAAAGTTCTTGTACTACTTTGCTGTTAACATGGGGGTTCTGACCACTGCTCCTTTGTTGGTAACTGTTCTCACATTTGGAACTGCTACCTTGTTGGGTGTTCCTTTGAATGCTGGCACTGTGTTCACTATTACTTCTGTGATCAAGATATTGCAAGAGCCGGTGAGAACTTTTCCTCAGGCTCTTATCTTGATTTCCCAAGCGATGATTTCGCTTGGGAGGTTGGATGAGTTCTTGATGAGTAAGGAAATGGATGAGGGTGCAGTGCAAAGAGTGAGTGGCTGTGATGGTCACTATGCTGTGGAGATAAAAGATGGGAAATTCTCGTGGGATGATGCAGATGGGAGTGTGGCACTGAGAGTTGAAGAGTTGGAAATCAAGAAAGGGGACCATGCTGCTGTTGTGGGAACAGTTGGGTCAGGCAAGTCTTCGTTGTTGGCTTCTGTGTTGGGGGAAATGTACAAGATATCAGGAAAGGTAAGCGTTTGTGGGTCAATAGCCTATGTAGCACAGACATCATGGATTCAGAATGCAACCATCCAAGAAAACATATTGTTTGGTTTGCCTATGAACAGAGAGAAGTACAAGGAAGCTTTAAGAGTGTGCTGCCTGGAAAAGGATCTTGAAATGATGGAATATGGAGACCAGACTGAGATTGGAGAACGGGGCATTAACCTCAGTGGTGGCCAGAAGCAACGTGTACAACTTGCTAGAGCTGTATACCAAGACTCTGACATCTATCTCCTTGACGATGTATTCAGTGCTGTTGATGCACAAACTGGATCATCTATTTTTAAGGAATGTATTATGGGAGCTCTAAAAAATAAGACCATTTTACTTGTAACCCACCAAGTTGACTTCTTGCATAACGTTGACTCTATAATGGTGATGAAAGAGGGGGAAATCGTGCAAAGTGGGAAGTATGATGAACTTCTCAAAGCAGGCCTGGATTTCGGTGCACTTGTGGCTGCTCATGAATCCTCTATGGAGATTGCAGAGTCTAGAGACAAAGGTGATGATGATACTGCCCAGTCTCCAAAACTTGCTCGCATCCCTTCAAAAGAAAAGGAAAAGTCAACTGAAAAGCAACCTCAAGATCAATCTAAGTCAGACAAGGATAAAGCAAAGCTCATTGAAGATGAGGAAAAAGAAACAGGCAGTGTGAACCTTAAAGTGTATAAGCATTACTTCACTGAAGCATTTGGGTGGTGGGGTGTTGCACTGATGCTAGCAATGTCTTTAGCATGGATTTTATCCTTCTTGGCTGGTGACTACTGGCTAGCAATTGGAACTGCAGAAGATTCTGTGTTTCCTCATTCTACATTCATTATTGTCTATGCTATCATAGCAGCTGTTGTTTGTGTTGTGGTGATGATCAGATCACTCTTATTTACCTATTGGGGTCTAAAGACATCTCAAAGCTTCTTCACTGGAATGCTTCAAAGCATCCTGCATGCACCTATGTCATTCTTTGACACCACTCCTTCTGGCAGAATATTGAGTCGTGTATCTACTGATATACTTTGGGTTGATATATCAATTCCAATGTTAACAAACTTTGTAATGGTAGCGTACTTCTCATTAGTCAGCATCTTCTTTGTGACGTGCCAAAATGCTTGGGAGACGATCTTCCTCTTAATTCCACTGTTCTGGCTCAACAACTGGTATCGGAAATATTACCTTGCATCATCTCGGGAATTGACTCGCCTTGATTCTATCACCAAAGCTCCTGTGATTCATCACTTTTCAGAAACCATTGCTGGTGTTATGACCATCCGTGGCTTCAGAAAGCAGAACTTATTTTCTCAAGAAAATATTGATAGAGTCAATGCTAGTCTGAGAATGGATTTCCACAACAATGGTGCTAATGAATGGCTTGGCTTTCGCTTGGACTACCTGGGAGTGGTTTTCCTTTGCATTTCCACTATTTTCATGATCTTTTTGCCTAGTGCTATTATTAAGCCAGAATATGTTGGTTTATCTTTGTCCTATGGCCTGGCTCTCAGTAGTCTCTTGTCATTAACCATAACCATGACTTGCTCTGTTGAGAACAAAATGGTTTCAGTTGAGAGAATAAAGCAGTTCACCAACCTTCCCTCAGAAGCTCCATGGAAAATTGCTGATAGGTCTCCTCCTCAGAATTGGCCTAGTCAAGGCAATATTGAGTTAAACAATTTGCAGGTTCGGTATCGTCCAAATACTCCTCTAGTTCTCAAGGGAGTCTCTCTCAGCATTCAAGGAGGAGAAAAGATTGGTGTTGTTGGTCGTACAGGTAGTGGGAAATCAACCCTCATTCAGGTGCTATTTAGGTTGATTGAGCCTTCAGCTGGGAAAATAATCGTTGATGGGATCAACATTTGCACTGTGGGCCTTCATGATCTGAGGTCTCGATTTGGAATCATTCCTCAAGAGCCTGTCCTCTTTCAAGGAACAGTACGAAGCAACATTGACCCCCTTGGACTGTATTCAGAAGAAGAAATTTGGAAGAGCCTTGAGCGCTGCCAACTGAAAGATGTGGTGGCTGCAAAGCCTGAGAAACTTGAGGCTTCAGTGGTTGATGGTGGAGACAACTGGAGTGTGGGGCAAAGGCAGCTTCTTTGCTTGGGAAGGATCATGCTAAAACGTAGCAAAATACTATTCATGGATGAGGCAACAGCATCCGTTGATTCACAAACTGATGTTGTGATACAAAAGATCATCCGTGAGGACTTTGCAGATCGTACAATTATCAGCATTGCTCACAGAATACCAACGGTCATGGATTGTGACAGGGTTTTAGTCATTGATGCAGGCCTTGCAAAGGAATTTGATAGGCCATCACGTTTGCTAGAAAGGCATTCACTTTTTGGGGCATTGGTTAAGGAGTACTCCAATAGATCAGCTTAA 4548 0.4316 MIYLSLTSHHSNMSSSSSSFASPSWLTSPLCSSLDIDSSSPSSQFLLQWLRFIFLSPCPQRLLLSALDLIFLLSLLAFAAHKLYSRFTFNTNSTITKPLLQDKDSDYKVTLWFKLPFLVTTLLATAYTVLAILAFTQTNFASWKLIEALFRVFQAIANIVVVILMVHEKKFKAAKHPLSLRIYWMANLVVSCLFATSAIVRLVTVDGARLEISLRVDDVFSLVNLPLSAFLFLVAMKGSTGIQVIRISDVVRAYQCLSNDRTLSPYAYASFLSKTVWFWMNPLLNRGYKTPLKLEDVPSLPIEFRAEKMSELFQSNWPKPEDSSKHPVGLTLFRSFWKHIAFTGFLAVIRLAVMYIGPMLIQSFVDFTSRENSTPYEGLVLILILYLAKSVEVLSVHQFNFHSQKLGMLIRSSIITSVYKKGLRLSSSSRQTHGTGQIVNHMAVDAQQLSDLMMQFHPIWLMPLQVAAALGLIYNYVGLSALAALLGTTLVFIFTLFRTKKSNSFQFRIMTSRDLRMKATNELLNNMRVIKFQAWEEYFGNKIQQFREAEHGWIGKFLYYFAVNMGVLTTAPLLVTVLTFGTATLLGVPLNAGTVFTITSVIKILQEPVRTFPQALILISQAMISLGRLDEFLMSKEMDEGAVQRVSGCDGHYAVEIKDGKFSWDDADGSVALRVEELEIKKGDHAAVVGTVGSGKSSLLASVLGEMYKISGKVSVCGSIAYVAQTSWIQNATIQENILFGLPMNREKYKEALRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRVQLARAVYQDSDIYLLDDVFSAVDAQTGSSIFKECIMGALKNKTILLVTHQVDFLHNVDSIMVMKEGEIVQSGKYDELLKAGLDFGALVAAHESSMEIAESRDKGDDDTAQSPKLARIPSKEKEKSTEKQPQDQSKSDKDKAKLIEDEEKETGSVNLKVYKHYFTEAFGWWGVALMLAMSLAWILSFLAGDYWLAIGTAEDSVFPHSTFIIVYAIIAAVVCVVVMIRSLLFTYWGLKTSQSFFTGMLQSILHAPMSFFDTTPSGRILSRVSTDILWVDISIPMLTNFVMVAYFSLVSIFFVTCQNAWETIFLLIPLFWLNNWYRKYYLASSRELTRLDSITKAPVIHHFSETIAGVMTIRGFRKQNLFSQENIDRVNASLRMDFHNNGANEWLGFRLDYLGVVFLCISTIFMIFLPSAIIKPEYVGLSLSYGLALSSLLSLTITMTCSVENKMVSVERIKQFTNLPSEAPWKIADRSPPQNWPSQGNIELNNLQVRYRPNTPLVLKGVSLSIQGGEKIGVVGRTGSGKSTLIQVLFRLIEPSAGKIIVDGINICTVGLHDLRSRFGIIPQEPVLFQGTVRSNIDPLGLYSEEEIWKSLERCQLKDVVAAKPEKLEASVVDGGDNWSVGQRQLLCLGRIMLKRSKILFMDEATASVDSQTDVVIQKIIREDFADRTIISIAHRIPTVMDCDRVLVIDAGLAKEFDRPSRLLERHSLFGALVKEYSNRSA 1515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01671 1515 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1275 1509 IPR003439 GO:0005524
Cca08g01671 1515 Pfam ABC transporter 677 806 IPR003439 GO:0005524
Cca08g01671 1515 Pfam ABC transporter 1292 1440 IPR003439 GO:0005524
Cca08g01671 1515 Gene3D - 1259 1508 IPR027417 -
Cca08g01671 1515 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 957 1238 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca08g01671 1515 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 76 1515 - -
Cca08g01671 1515 ProSitePatterns ABC transporters family signature. 780 794 IPR017871 GO:0005524
Cca08g01671 1515 CDD ABCC_MRP_domain2 1273 1493 - -
Cca08g01671 1515 Pfam ABC transporter transmembrane region 342 609 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca08g01671 1515 Pfam ABC transporter transmembrane region 991 1201 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca08g01671 1515 CDD ABCC_MRP_domain1 655 855 - -
Cca08g01671 1515 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 341 621 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca08g01671 1515 Gene3D ABC transporter type 1, transmembrane domain 325 634 IPR036640 GO:0005524|GO:0016021
Cca08g01671 1515 Gene3D ABC transporter type 1, transmembrane domain 922 1256 IPR036640 GO:0005524|GO:0016021
Cca08g01671 1515 Gene3D - 635 900 IPR027417 -
Cca08g01671 1515 SUPERFAMILY ABC transporter transmembrane region 331 633 IPR036640 GO:0005524|GO:0016021
Cca08g01671 1515 SUPERFAMILY ABC transporter transmembrane region 957 1255 IPR036640 GO:0005524|GO:0016021
Cca08g01671 1515 MobiDBLite consensus disorder prediction 885 932 - -
Cca08g01671 1515 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 652 874 IPR027417 -
Cca08g01671 1515 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 76 1515 - -
Cca08g01671 1515 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1265 1508 IPR027417 -
Cca08g01671 1515 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 655 878 IPR003439 GO:0005524
Cca08g01671 1515 CDD ABC_6TM_ABCC_D2 956 1250 IPR044726 GO:0140359
Cca08g01671 1515 SMART AAA_5 682 855 IPR003593 -
Cca08g01671 1515 SMART AAA_5 1301 1486 IPR003593 -
Cca08g01671 1515 CDD ABC_6TM_ABCC_D1 342 629 IPR044746 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01671 Cca-Chr8 48426459 48434841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01671 655 867 Calmodulin-binding Proteins AT2G36910 32.456 4.51e-23 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01671 - K05665 gmx:100780167 2529.98