Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01665 ATGTTGATAGTGTTGAGAATGGATTTCTTGACCCAGGAGATCATCATGCTTAGCCCTGAGGGTGAACTTAAAATAAGTTTTGGCTATCAATGCAATAGTGATAGAGGCGTACCTTGCAATGAAATCCACAGAACAAGCAGTTTCTCCTGCTTGTCCGGGGCTGCCTTAAGTGCAAATGCTACACTTGCCAACACAAACATCTGCAATGGAGTAATAGGAGAAGAAATCCTTCCGAGTTTGGACTCTCCTAAATCATTTCGTAAGGTACCCTCCTCGTCGAGTTTTCCAAAGTTGGACATATTATCGTCTTCTGTCCATAGTAGTTTGTCAAACCTAAGTTGCAGTCCATCCACTCCAAGTAATATGCTTGAATATGACCCTTGTTCATTAAAATCCATGAGTGCTCCTTCTAGAAGTGAAGGTTTTCTCAATGCCATGGAAGTTCAGGTTGCTGGAGGAGCTGCTGGTGAAGATAGAGTTCAAGCAGTTTGTTCTGAAGAAAAAGGCTGGCTCTTCTGTGCAATTTATGATGGATTTAATGGGAGAGATGCAGCTGACTTTCTGGCTGGTACCCTTTACGACACTATCATAAATATGTTATGCTGGGATTTGGAACCAGATTCCATAAAAGTTTCTGACGATGTGGATATGGGTGGATCCTTTCAATATAATTTGGATGATAGTCTTATTCTTCAGGAGCATCAATCTCTGTTAACATTTAAGGGAAACAATTCTATTCTTGACTGTTTTGCAAACAGTACTCCACCTTCCAAGTCAGAAGCATCTCCTAAATCATTTTCACAAACAGTACTTGATGGCCTCCAGCATGTTCTTAGTCAGGTTGAGAATGATTTCCTGTACATGGTTGAGCAAGAAATGGAGGAACGGCCAGATTTAGTTTCAGTTGGATCTTGTGTTTTACTTGTGCTTATTCATGGGAATCATCTATATACACTTAATCTAGGCGACAGCAGAGCAGTATTGGCAACATGCAGCACAGATAACAGAATGAGTGGGAATGAGAGATTGAAGCCTATCCAGCTCACAGATAGTCATACTGTTGACAATGAAGCTGAAAGAGCTCGAATTCTCGCTGATCATCCTGATGATCCTAAAACCGTAGTAGCCGGGAAAGTGAAGGGAAAACTAAAGGTTACACGAGCTTTAGGAGCAGGCTACTTGAAAAAGAAAAATCTTAATGATGCATTGATAGGAATCCTTCGAGTACGTGATCTTACAAGCCCACCATATATATCAACTGATCCATCGCTGAATGTGCACAAAATCTCAGATTCTGATCAATTTGTTATAGTTGGGAGTGATGGTTTATTTGACTTCTTCAGCAATGATGAAGCAGTAAAGCTTGTAGAGTCTTATATCTTGAGAAATCCTTTTGGCGATCCAGCAAAATTTCTTATTGAGCAACTAGTTGCAAGAGCAGCTGATTCTGCAGGTTTCAGCATGGAAGAGTTGATGAATGTTCCAGATGGGAGGAGGAGGAAGTACCATGATGACGTAACTGTAATTGTGATCATCCTTGGTATGCATCAACGGACTTCAAAAGCATCAATTTGCATCTAG 1581 0.4073 MLIVLRMDFLTQEIIMLSPEGELKISFGYQCNSDRGVPCNEIHRTSSFSCLSGAALSANATLANTNICNGVIGEEILPSLDSPKSFRKVPSSSSFPKLDILSSSVHSSLSNLSCSPSTPSNMLEYDPCSLKSMSAPSRSEGFLNAMEVQVAGGAAGEDRVQAVCSEEKGWLFCAIYDGFNGRDAADFLAGTLYDTIINMLCWDLEPDSIKVSDDVDMGGSFQYNLDDSLILQEHQSLLTFKGNNSILDCFANSTPPSKSEASPKSFSQTVLDGLQHVLSQVENDFLYMVEQEMEERPDLVSVGSCVLLVLIHGNHLYTLNLGDSRAVLATCSTDNRMSGNERLKPIQLTDSHTVDNEAERARILADHPDDPKTVVAGKVKGKLKVTRALGAGYLKKKNLNDALIGILRVRDLTSPPYISTDPSLNVHKISDSDQFVIVGSDGLFDFFSNDEAVKLVESYILRNPFGDPAKFLIEQLVARAADSAGFSMEELMNVPDGRRRKYHDDVTVIVIILGMHQRTSKASICI 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01665 526 CDD PP2Cc 155 513 IPR001932 -
Cca08g01665 526 PANTHER PROTEIN PHOSPHATASE 2C 40-RELATED 16 525 - -
Cca08g01665 526 Pfam Protein phosphatase 2C 274 468 IPR001932 -
Cca08g01665 526 PANTHER PROTEIN PHOSPHATASE 2C 16 525 IPR015655 GO:0004722|GO:0006470
Cca08g01665 526 ProSiteProfiles PPM-type phosphatase domain profile. 142 513 IPR001932 -
Cca08g01665 526 Gene3D - 115 522 IPR036457 -
Cca08g01665 526 SMART PP2C_4 133 511 IPR001932 -
Cca08g01665 526 SUPERFAMILY PP2C-like 156 514 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01665 Cca-Chr8 48355792 48363266 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01665 19 526 PP2C-type Phosphatase Gene Family AT3G16560 61.450 0.0 581
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01665 - - gmx:100791404 867.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01665 08 48355792 48363266 Cca08g01665 08 48355792 48363266 ECH
Cca11g02779 11 55141696 55144760 Cca08g01665 08 48355792 48363266 PCT