Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca08g01656 | ATGTATCGTTCCCAACGCTTCAAACCCCTTCTCGCAAGAACACCGCTCCAACCCAATCCTTTTCCCTCAACATTTTCTCTGAAATGTAAATTCACCTCACTCGCTCCCCAACACCACTCCTTCACCGTCTCTTACCTCATCAACAACTGCGCCTTCTCACCCGAAACTGCTCTCAAAGCTTCCGAACGCGTTCGCTTCGACACCGCCGAAAAGCCCGACTCAGTAATCGCCTTCTTCAGAAACAACGGGTTTTCAAATTCCCAGATAAACAGCATCTTCAGAAGAATACCCGACTTGCTTACATGCAACCCCCACAAAAGGGTTTTGCCAAAGTTCCAATTTTTAGCCTCCAAAGGCGCTTCCAACTCCGACATCGTTCAATTGGTGAACCGGTGCCCAAGACTCCTTACCTCCAGCCTCGAGAATAACGTCATCCCCACCTTCGAATTGAATGTGAACATGTTGGTGGATGTTGGGGTCAGGGACTCCGACATCTCTTATTTGTTCCGTAAGAGGCCCTCTATTCTCTTGTCTAATGACCTGAAGAGGACTGTTGATGAAGTTAAGGAAATGGGGTTTGACCCTTTGAAAATAGTGTTTGTGATGGCTTTGCACGCCAAAAGGGGTGTTTCGAAATTGCGGTGGGACGCGAAAGTTGACGCCTTTAAGAGCTGGGGTTGGTCTGAAGAAGTGGTTCTTGATACGTTCAGGAAGAATCCACTGTTTATGTTGATGTCAAAAGATAAAATCAATGAGGTGATGCGGTTTTGTGTTGATGAGTTGGGGTGGGACCCTTTGGCCCTTGCCAAGTGGCCGACTATGTTTGGGTATAGTTTGGAGGGAAGGATCATTCCGAGGGGTTTGGTGGTCCGGTATTTGATTGCAAAGGGTTTGAGAGGAATGAGTGCCAACTTGTTTACACCGTTTAATATTTCTGAGGAGTTGTTTCTTGAAAATTATGTGACGCGTTTTAAGAAGGAAAAGCCTCATCTGTTGAAGCTGTACAAGAAAAAACGAGGTTCCAAGAAAACAGGGATAACTAACTCATCATGA | 1053 | 0.4606 | MYRSQRFKPLLARTPLQPNPFPSTFSLKCKFTSLAPQHHSFTVSYLINNCAFSPETALKASERVRFDTAEKPDSVIAFFRNNGFSNSQINSIFRRIPDLLTCNPHKRVLPKFQFLASKGASNSDIVQLVNRCPRLLTSSLENNVIPTFELNVNMLVDVGVRDSDISYLFRKRPSILLSNDLKRTVDEVKEMGFDPLKIVFVMALHAKRGVSKLRWDAKVDAFKSWGWSEEVVLDTFRKNPLFMLMSKDKINEVMRFCVDELGWDPLALAKWPTMFGYSLEGRIIPRGLVVRYLIAKGLRGMSANLFTPFNISEELFLENYVTRFKKEKPHLLKLYKKKRGSKKTGITNSS | 350 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca08g01656 | 350 | PANTHER | TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN | 13 | 150 | - | - | |
Cca08g01656 | 350 | PANTHER | TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN | 151 | 340 | - | - | |
Cca08g01656 | 350 | SMART | mt_12 | 233 | 264 | IPR003690 | GO:0003690|GO:0006355 | |
Cca08g01656 | 350 | SMART | mt_12 | 265 | 299 | IPR003690 | GO:0003690|GO:0006355 | |
Cca08g01656 | 350 | SMART | mt_12 | 126 | 161 | IPR003690 | GO:0003690|GO:0006355 | |
Cca08g01656 | 350 | SMART | mt_12 | 90 | 121 | IPR003690 | GO:0003690|GO:0006355 | |
Cca08g01656 | 350 | SMART | mt_12 | 166 | 194 | IPR003690 | GO:0003690|GO:0006355 | |
Cca08g01656 | 350 | Gene3D | Transcription termination factor 3, mitochondrial | 150 | 328 | IPR038538 | - | |
Cca08g01656 | 350 | Gene3D | Transcription termination factor 3, mitochondrial | 53 | 149 | IPR038538 | - | |
Cca08g01656 | 350 | Pfam | mTERF | 147 | 316 | IPR003690 | GO:0003690|GO:0006355 | |
Cca08g01656 | 350 | Pfam | mTERF | 77 | 143 | IPR003690 | GO:0003690|GO:0006355 | |
Cca08g01656 | 350 | PANTHER | CGI-12 PROTEIN-RELATED | 151 | 340 | IPR003690 | GO:0003690|GO:0006355 | |
Cca08g01656 | 350 | PANTHER | CGI-12 PROTEIN-RELATED | 13 | 150 | IPR003690 | GO:0003690|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca08g01656 | Cca-Chr8 | 48184629 | 48185768 | Tandem |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | mTERF | Cca08g01656 | mTERF | 9.4e-18 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca08g01656 | K15032 | - | gmx:100792944 | 439.884 |