Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01656 ATGTATCGTTCCCAACGCTTCAAACCCCTTCTCGCAAGAACACCGCTCCAACCCAATCCTTTTCCCTCAACATTTTCTCTGAAATGTAAATTCACCTCACTCGCTCCCCAACACCACTCCTTCACCGTCTCTTACCTCATCAACAACTGCGCCTTCTCACCCGAAACTGCTCTCAAAGCTTCCGAACGCGTTCGCTTCGACACCGCCGAAAAGCCCGACTCAGTAATCGCCTTCTTCAGAAACAACGGGTTTTCAAATTCCCAGATAAACAGCATCTTCAGAAGAATACCCGACTTGCTTACATGCAACCCCCACAAAAGGGTTTTGCCAAAGTTCCAATTTTTAGCCTCCAAAGGCGCTTCCAACTCCGACATCGTTCAATTGGTGAACCGGTGCCCAAGACTCCTTACCTCCAGCCTCGAGAATAACGTCATCCCCACCTTCGAATTGAATGTGAACATGTTGGTGGATGTTGGGGTCAGGGACTCCGACATCTCTTATTTGTTCCGTAAGAGGCCCTCTATTCTCTTGTCTAATGACCTGAAGAGGACTGTTGATGAAGTTAAGGAAATGGGGTTTGACCCTTTGAAAATAGTGTTTGTGATGGCTTTGCACGCCAAAAGGGGTGTTTCGAAATTGCGGTGGGACGCGAAAGTTGACGCCTTTAAGAGCTGGGGTTGGTCTGAAGAAGTGGTTCTTGATACGTTCAGGAAGAATCCACTGTTTATGTTGATGTCAAAAGATAAAATCAATGAGGTGATGCGGTTTTGTGTTGATGAGTTGGGGTGGGACCCTTTGGCCCTTGCCAAGTGGCCGACTATGTTTGGGTATAGTTTGGAGGGAAGGATCATTCCGAGGGGTTTGGTGGTCCGGTATTTGATTGCAAAGGGTTTGAGAGGAATGAGTGCCAACTTGTTTACACCGTTTAATATTTCTGAGGAGTTGTTTCTTGAAAATTATGTGACGCGTTTTAAGAAGGAAAAGCCTCATCTGTTGAAGCTGTACAAGAAAAAACGAGGTTCCAAGAAAACAGGGATAACTAACTCATCATGA 1053 0.4606 MYRSQRFKPLLARTPLQPNPFPSTFSLKCKFTSLAPQHHSFTVSYLINNCAFSPETALKASERVRFDTAEKPDSVIAFFRNNGFSNSQINSIFRRIPDLLTCNPHKRVLPKFQFLASKGASNSDIVQLVNRCPRLLTSSLENNVIPTFELNVNMLVDVGVRDSDISYLFRKRPSILLSNDLKRTVDEVKEMGFDPLKIVFVMALHAKRGVSKLRWDAKVDAFKSWGWSEEVVLDTFRKNPLFMLMSKDKINEVMRFCVDELGWDPLALAKWPTMFGYSLEGRIIPRGLVVRYLIAKGLRGMSANLFTPFNISEELFLENYVTRFKKEKPHLLKLYKKKRGSKKTGITNSS 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01656 350 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 13 150 - -
Cca08g01656 350 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 151 340 - -
Cca08g01656 350 SMART mt_12 233 264 IPR003690 GO:0003690|GO:0006355
Cca08g01656 350 SMART mt_12 265 299 IPR003690 GO:0003690|GO:0006355
Cca08g01656 350 SMART mt_12 126 161 IPR003690 GO:0003690|GO:0006355
Cca08g01656 350 SMART mt_12 90 121 IPR003690 GO:0003690|GO:0006355
Cca08g01656 350 SMART mt_12 166 194 IPR003690 GO:0003690|GO:0006355
Cca08g01656 350 Gene3D Transcription termination factor 3, mitochondrial 150 328 IPR038538 -
Cca08g01656 350 Gene3D Transcription termination factor 3, mitochondrial 53 149 IPR038538 -
Cca08g01656 350 Pfam mTERF 147 316 IPR003690 GO:0003690|GO:0006355
Cca08g01656 350 Pfam mTERF 77 143 IPR003690 GO:0003690|GO:0006355
Cca08g01656 350 PANTHER CGI-12 PROTEIN-RELATED 151 340 IPR003690 GO:0003690|GO:0006355
Cca08g01656 350 PANTHER CGI-12 PROTEIN-RELATED 13 150 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01656 Cca-Chr8 48184629 48185768 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Cca08g01656 mTERF 9.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01656 K15032 - gmx:100792944 439.884