Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01655 ATGGTAGAATCAAACAAGCCCCCGTTTCATCCTACTCTTCTCTACACATCAAGGCAAGCTCGGAAGCTCCCTCCACCCACTGTTCAGATGTATCGTTCCCAACGCTTCAAACCCCTTCTCGCAAGAACACCGCTCCAACCCAATCCTTTTCCCTCAACATTTTCTCTGAAATGTAAATTCACCTCACTCGCTCCCCAACACCACTCCTTCATCGTCTCTTACCTCATCAACAACTGCGCCTTCTCACCCGAAACTGCTCTCAAAGCTTCCGAACGCGTTCGCTTCGACACCGCCGAAAAGCCCGACTCAGTAATCGCCTTCTTCAGAAACAACGGGTTTTCAAATTCCCAGATAAACAGCATCTTCAGAAGAATACCCAGCTTGCTTACATGCAACCCCCACAAAAGGGTTTTGCCAAAGTTCCAATTTTTAGCCTCCAAAGGCGCTTCCATCTCCGACATCGTTCAATTGGTGAACCGGTGCCCAAGACTCCTTACCTCCAGCCTCGAGAATAACGTCATCCCCACCTTCGAATTGGTAAGGAGATTCCTTCATGCTGATAAGAAAATAATCGATTGTGTCTTCGGTAATCGTCATTTCCTTGATTACAAAGCTGCTGTACAGAATGTGAACATGTTGGTGGATGTTGGAGTCAGGGACTCCAACATCTCCTATTTGTTCCGTACGAGGCCCTCTATTCTCTTGTCTAATGACCTGAAGAGGACTGTTGATGAAGTTAAGGAAATGGGGTTTGACCCTTCGAAAATAGGGTTTGTGATGGCTTTGCACGCCAAAAGGGGTGTTTCGAAATTGCGGTGGGACGCGAAAGTTGACGCCTTTAAGAGCTGGGGTTGGTCTGAAGAAGTGGTTCTCGATACGTTCAGGAAGAATCCACTGTTTATGTTGATGTCAAAAGATAAAATCAATGAGGTGATGCGGTTTTGTGTTGATGAGTTGGGGTGGGACCCTTTGGCCCTTGCCAAGTGGCCGACTATGTTTGGGTATAGTTTGGAGGGAAGGATCATTCCGAGGGGTTTGGTGGTCCGGTATTTGATTGCAAAGGGTTTGAGAGGAAAGAGTGCCAGCTTGTTTACACCGTTTACTATTTCTGAGGAGTTGTTTCTTGAAAATTATTCACAGTCACAAGAACATTGCCTCAAACCCCTAAACCTCGTCCTTTCCCATCAACACAAACACTTTCCGAAGCCCATCTCGATTTCTTCACAACAACACCATGAATTCCCCGTTTCCTACCTCATAAACAATTGCCATTTCTCATCAGAAACTGCTCTCAAGGCCTCCAAATTTCTTCGCGTGGTTATCATATGA 1329 0.462 MVESNKPPFHPTLLYTSRQARKLPPPTVQMYRSQRFKPLLARTPLQPNPFPSTFSLKCKFTSLAPQHHSFIVSYLINNCAFSPETALKASERVRFDTAEKPDSVIAFFRNNGFSNSQINSIFRRIPSLLTCNPHKRVLPKFQFLASKGASISDIVQLVNRCPRLLTSSLENNVIPTFELVRRFLHADKKIIDCVFGNRHFLDYKAAVQNVNMLVDVGVRDSNISYLFRTRPSILLSNDLKRTVDEVKEMGFDPSKIGFVMALHAKRGVSKLRWDAKVDAFKSWGWSEEVVLDTFRKNPLFMLMSKDKINEVMRFCVDELGWDPLALAKWPTMFGYSLEGRIIPRGLVVRYLIAKGLRGKSASLFTPFTISEELFLENYSQSQEHCLKPLNLVLSHQHKHFPKPISISSQQHHEFPVSYLINNCHFSSETALKASKFLRVVII 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01655 442 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 41 381 - -
Cca08g01655 442 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 392 438 - -
Cca08g01655 442 PANTHER CGI-12 PROTEIN-RELATED 41 381 IPR003690 GO:0003690|GO:0006355
Cca08g01655 442 PANTHER CGI-12 PROTEIN-RELATED 392 438 IPR003690 GO:0003690|GO:0006355
Cca08g01655 442 Pfam mTERF 106 310 IPR003690 GO:0003690|GO:0006355
Cca08g01655 442 Pfam mTERF 206 374 IPR003690 GO:0003690|GO:0006355
Cca08g01655 442 SMART mt_12 291 322 IPR003690 GO:0003690|GO:0006355
Cca08g01655 442 SMART mt_12 155 187 IPR003690 GO:0003690|GO:0006355
Cca08g01655 442 SMART mt_12 119 150 IPR003690 GO:0003690|GO:0006355
Cca08g01655 442 SMART mt_12 224 252 IPR003690 GO:0003690|GO:0006355
Cca08g01655 442 SMART mt_12 323 357 IPR003690 GO:0003690|GO:0006355
Cca08g01655 442 Gene3D Transcription termination factor 3, mitochondrial 187 385 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01655 Cca-Chr8 48156033 48161873 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Cca08g01655 mTERF 4.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01655 K15032 - gmx:100792944 422.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02789 11 55234249 55236145 Cca08g01655 08 48156033 48161873 PCT