Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01654 ATGGATGATAGCATTGGAGGTAGTTCCTCTAACGACAATGGCATCAAGGAACAAGACCGGTTGCTGCCAATAGCCAATGTTGGTCGGCTAATGAAGCAGATTCTGCCTCAGAACGCTAAAATCTCGAAGGAAGCGAAGGAGACGATGCAAGAATGTGTGTCGGAGTTCATAAGCTTCGTGACCAGCGAAGCTTCGGACAAGTGCAGGAAGGAGAGGAGAAAGACTGTGAATGGTGATGACATTTGCTGGGCCTTGGCAACATTAGGCTTTGATGACTATGTGGAACCAATGAGAAGGTCTTTGCATGAGCTTTTGGCTAATCTATTTTGGGAATCAATAAATCTTGGGCATGGTTTGTTCAGAAATCTGTTCTTGAAACTCTCATAA 387 0.447 MDDSIGGSSSNDNGIKEQDRLLPIANVGRLMKQILPQNAKISKEAKETMQECVSEFISFVTSEASDKCRKERRKTVNGDDICWALATLGFDDYVEPMRRSLHELLANLFWESINLGHGLFRNLFLKLS 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01654 128 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 9 103 - -
Cca08g01654 128 PRINTS CCAAT-binding transcription factor subunit A signature 49 67 - -
Cca08g01654 128 PRINTS CCAAT-binding transcription factor subunit A signature 68 86 - -
Cca08g01654 128 PRINTS CCAAT-binding transcription factor subunit A signature 87 105 - -
Cca08g01654 128 ProSitePatterns NF-YB/HAP3 subunit signature. 52 68 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cca08g01654 128 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 9 103 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cca08g01654 128 Gene3D Histone, subunit A 10 107 IPR009072 GO:0046982
Cca08g01654 128 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 21 85 IPR003958 -
Cca08g01654 128 SUPERFAMILY Histone-fold 18 103 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01654 Cca-Chr8 48098650 48099493 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01654 15 102 CCAAT-HAP3 Transcription Factor Family AT2G47810 80.682 9.59e-52 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Cca08g01654 CBFD_NFYB_HMF 5.4e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01654 K08065 - gmx:102663543 182.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01654 08 48098650 48099493 Cca08g01654 08 48098650 48099493 ECH
Cca11g02791 11 55256686 55257315 Cca08g01654 08 48098650 48099493 PCT