Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01645 ATGGAACCAAATGGCGGATTCTTGGTGGATGAGAAAGCCGTTAGCGTTGAGAACGCTTTCTTAGATTTTCTCAAAAGCTTCAGATCTGGCCAGCGGAACGAACTCTATTACGAAGGGGAGATTGAAGTGATGAAAGCTAACGAATCCAACACGATGTTCATCGATTTCGATCATGTCAACAGATTCAGCGACCTTCTACAGCTGGCTATTTCGGATGAATATTTGAGGTTTGAACCTTACTTAAAGAATGCCTGTAAGAGATTTGTTATGGAGCTCAAGCCAACCTTCATATCTGATGATAACCCTAACAAGGACATCAACATTGCCTTCTACAACATTCCAGTTATTAAGAGGTTAAGAGAATTGGCTACATCAGAAATTGGAAGACTTGTATCAGTGACAGGAGTGGTGACAAGGACAAGTGAGGTTCGACCTGAACTTCTCCAAGGGACTTTCAAGTGCCTGGAATGTGGCGGGGTTATAAAGAATGTTGAACAACAATTCAAGTATACTGAGCCAACAATTTGCACCAATGCCACCTGTAGCAATCGAACAAGGTGGGTACTGCTGCGCCAAGACAGTAAATTTGCGGATTGGCAAAGAGTCAGAATGCAAGAGACATCAAAAGAGATACCTGCTGGCTCTCTTCCTAGATCATTGGATGTTATTCTTCGTCACGAGATTGTTGAACAAGCCAGGGCTGGTGACACGGTGATTTTCACAGGTACTTTAGTTGTTATACCTGACATACTGGCATTGGCCTCTCCTGGGGAGAGATCAGAGTGCCGCAGGGAAGCTTCTCAGCGCAAGGGTGCTTCAGCTGGAAATGAAGGCGTGAGTGGCCTTAAGGCTCTGGGAGTCAGAGACCTCTCCTATCGTCTGGCTTTTATTGCCAACTCTGTTCAGATTTGTGATGGTAGAAGAGAAACAGACATCAGGAATAGAAAAAAGGATTCTGATGAAGACGATCAACAGTTTAATGCACAAGAACTGGATGAGATTCAACGAATGAGGAATACTCCAGATTTCTTCACCAAACTAGTTGAAAGCGTTGCTCCAACTGTTTTTGGTCATGCAGATATAAAGCGTGCAATCCTTCTTATGCTTATGGGTGGTGTCCACAAATTTACTCATGAAGGCATCAGCCTCAGAGGAGACATAAACATTTGTATTGTTGGAGATCCCAGCTGTGCAAAGTCTCAATTTCTTAAGTATACATCAGGCCTAGTTGCAAGATCCGTGTATACATCTGGGAAATCATCATCGGCTGCTGGCTTGACTGCAACTGTTGCTAAGGAACCAGAAACTGGGGAGTTTTGTATTGAGGCTGGTGCTTTGATGCTTGCGGACAATGGCATTTGCTGCATTGATGAATTTGACAAGATGGACATCAGAGATCAGGTTGCAATTCATGAGGCCATGGAACAGCAGACTATTAGTATCACAAAAGCAGGAATACAAGCAACACTTAATGCTCGTACTTCTATTCTTGCCGCTGCCAACCCAGCTGGAGGACGCTATGACAAGTCTAAACCACTTAAGTACAATGTGGCTCTTCCACCAGCTATACTTTCAAGGTTTGATCTCGTGTATGTTATGATTGATGACCCAGATGATCAGACAGACTACCACATAGCTCATCACATTGTGAGAGTTCATCAAAAGCGTGAAGGTGCTCTTGCACCAGCATTCACTACAGCAGAACTAAAGCGTTATATATCGTATGCAAAAACTCTTAAACCAAAGCTCACGTCAGATGCCAGAAAAATACTGGTAGATTCTTATGTTGCTCTCCGTAGAGGTGATACAAATCCTGGGAGTAGGGTTGCATATAGAATGACAGTTAGGCAGTTGGAGGCATTAATCAGGCTGTCAGAGGCCATTGCACGGACTCATTTGGAAAATCAGGTACAACCTCATCATGTTCGTCTAGCCGTAAAACTGCTAAAAACTTCCGTAATAAGTGTGGAGTCCAGTGAGATTGATCTGTCTGAGTTTCAAGAAAATCGGGAAGACGGCCCAGGTAGTGGTGATGGTGACGGAAATGATAATAATAGAGATGCTAATGATCAAGCGGGAAATTCTACAGCTCAGCAAGCTGCTGGAGCTGATGGAAATCCAGCAGATGGATCTAACCCGCAAGGGATGAATGAAGCTGCTGGAAATGATGGAAATCCAGCAGATGGAACTAAACAACCGAAAAAACTCGTTATAAGTGATGAATATTTTCAGAGGGTTACCAGGGCCCTTGTCATGTGCCTTAGACAGCAGGAAGAGGCTGCTATGCGAGAAGGAACTGGTCTGGTTGGGATGAGGCAACGAGATTTGATCCAATGGTACGTGAATCAGCAAAATGAGACAAACAACTACAGTTCGATGGAGGAGGCAGCAGCTGAAGTTTCCAAAATTAAAGCCATTATAGAGAGCTTAATTCGAAGAGAGGGCCATTTGGTAGTGGTAGATGATGGTGGTCAAGAACACTCTAGAAATAACCGAATTTTAGCTGTGGCTCCTAATTATGTCATTGATTGA 2532 0.4368 MEPNGGFLVDEKAVSVENAFLDFLKSFRSGQRNELYYEGEIEVMKANESNTMFIDFDHVNRFSDLLQLAISDEYLRFEPYLKNACKRFVMELKPTFISDDNPNKDINIAFYNIPVIKRLRELATSEIGRLVSVTGVVTRTSEVRPELLQGTFKCLECGGVIKNVEQQFKYTEPTICTNATCSNRTRWVLLRQDSKFADWQRVRMQETSKEIPAGSLPRSLDVILRHEIVEQARAGDTVIFTGTLVVIPDILALASPGERSECRREASQRKGASAGNEGVSGLKALGVRDLSYRLAFIANSVQICDGRRETDIRNRKKDSDEDDQQFNAQELDEIQRMRNTPDFFTKLVESVAPTVFGHADIKRAILLMLMGGVHKFTHEGISLRGDINICIVGDPSCAKSQFLKYTSGLVARSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKREGALAPAFTTAELKRYISYAKTLKPKLTSDARKILVDSYVALRRGDTNPGSRVAYRMTVRQLEALIRLSEAIARTHLENQVQPHHVRLAVKLLKTSVISVESSEIDLSEFQENREDGPGSGDGDGNDNNRDANDQAGNSTAQQAAGADGNPADGSNPQGMNEAAGNDGNPADGTKQPKKLVISDEYFQRVTRALVMCLRQQEEAAMREGTGLVGMRQRDLIQWYVNQQNETNNYSSMEEAAAEVSKIKAIIESLIRREGHLVVVDDGGQEHSRNNRILAVAPNYVID 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01645 843 Coils Coil 793 813 - -
Cca08g01645 843 PANTHER DNA REPLICATION LICENSING FACTOR MCM6 10 804 - -
Cca08g01645 843 ProSiteProfiles MCM family domain profile. 343 549 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cca08g01645 843 Pfam MCM P-loop domain 331 553 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cca08g01645 843 SMART mcm 115 654 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cca08g01645 843 Pfam MCM AAA-lid domain 568 652 IPR041562 -
Cca08g01645 843 ProSitePatterns MCM family signature. 452 460 IPR018525 GO:0003677|GO:0005524|GO:0006260
Cca08g01645 843 Gene3D - 732 843 - -
Cca08g01645 843 CDD MCM6 346 652 - -
Cca08g01645 843 Gene3D - 146 197 - -
Cca08g01645 843 Pfam MCM6 C-terminal winged-helix domain 734 842 IPR041024 -
Cca08g01645 843 Gene3D - 119 247 IPR012340 -
Cca08g01645 843 Gene3D - 8 115 - -
Cca08g01645 843 PRINTS Mini-chromosome maintenance (MCM) protein family signature 384 399 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cca08g01645 843 PRINTS Mini-chromosome maintenance (MCM) protein family signature 444 458 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cca08g01645 843 PRINTS Mini-chromosome maintenance (MCM) protein family signature 472 485 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cca08g01645 843 PRINTS Mini-chromosome maintenance (MCM) protein family signature 496 508 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cca08g01645 843 PRINTS Mini-chromosome maintenance (MCM) protein family signature 523 531 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cca08g01645 843 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 74 86 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cca08g01645 843 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 116 128 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cca08g01645 843 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 166 183 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cca08g01645 843 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 219 230 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cca08g01645 843 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 278 299 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Cca08g01645 843 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 10 804 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cca08g01645 843 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 654 IPR027417 -
Cca08g01645 843 MobiDBLite consensus disorder prediction 663 677 - -
Cca08g01645 843 SUPERFAMILY Nucleic acid-binding proteins 20 249 IPR012340 -
Cca08g01645 843 Pfam MCM N-terminal domain 18 112 IPR027925 -
Cca08g01645 843 MobiDBLite consensus disorder prediction 663 736 - -
Cca08g01645 843 Pfam MCM OB domain 119 247 IPR033762 -
Cca08g01645 843 Gene3D - 324 671 IPR027417 -
Cca08g01645 843 MobiDBLite consensus disorder prediction 686 702 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01645 Cca-Chr8 47978634 47984325 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01645 1 843 Core DNA Replication Machinery Family AT5G44635 70.181 0.0 1255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01645 K02542 - gmx:100787290 1404.42