Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01636 ATGGCATCTTCCGAGGTTGAAATTGCTTCCTCCTCGCCGTTTGGTTGTGTCCTAAGGGATCGCAATCACCGGGAAGCATGCAGGGAGAGCAACGTGAAGGGCACGCATAATGCTGCTACGTTTCAGAGAAACATCAACAACTTTGTGATCGATCTTAACACGTGCATGGCCGTGTCTTCTGATTCCacaacaaacgaaaacaacaacagtagtagtagtgacagcaataacaacaacagcaaGCAGCGTAAGTCTCCCAAAAACAACCACCTTGAAAGGCTATGTTTAACGAGATCCAAAACGTTcaacaacaacaacaatgacaatgataacaataaAGACGAATCCTCATTGGCCTCATTGATCAGCCCGAGACACTCAAGGCTTCTCGATCGATGGGCCGCAAAACAGGCTCGTGAGATGGTGTCAAATTTGGAGAACGAGGCTGAGTTGTTGTCCATGGACGACAATGACACGCTTCCAAGGACTTCTAGTTCCACCTCTGAAGAGTCCTCATCAGAGACTCGGAACATGGGTGCCTCTTCTCTCGTGCAGATATGGGAGAAGAGGTTGAACAAATCCGGTATGTCCAAAACCAATATGTCTGTGGACAGGATCACTTCCTCCTCTTCTCCCAATGCTGTAaatgagaatgagagtgagaatgaaagcgagaatgagaatgctaatgCTTTCTCTGTGGAGGAACAGTGCTTTGATGGACCATCAAATGAAGAACCGTTCCCTGATTGGGATTCTAGTGACCATTCTGTTTCGCCAGGTGGCAGGTCGGAGAAGGACAGGGTCAGTGTTGCTGATATCATAAGGAAGCTCACTACTACGAAGCAGAATCAGAGTCCAACACCTTCTTTTGTTGATGAAAATGAACATGAAGGGTATGGTGGTAGCTGTAGCGTGACAGGTAGTAGTGTGACAAGCTCTCCTTGTAGAGAACGTGAATGCGGTGGTGTCTCCACACAGCAACATGTGGAGCAGAACCAGAGAATTAATTTTTCTCTGCGAATTAGAGGGCGCCAAGCGTACAATGAATTGCTTATGCACATGGAGAATGACAGGCATAGGGAGGTAAACAACCTGGCAGAGCGTGGAGCAGTGTCCAGGTTTGCACAAAGAGGTCGCATTCAGGCAGTGCTTCGACTTAGATTATTGCAACGTGAGGTGGCAGCTAATGATCCCTCCCGCCAGAAATCAACAGAATCTGAAGTAAACAACAACAGACAACCACCGGGGGGATCCGCAATTATTATGCAATTAAGGGAAAGATTTAGCAGTGGAGCTGAACTTAGAACTCCGGTTCAGACAGAAGTAGCTAACGCAAGAAGTCCTCAAAGGGAAACAGTAAACAACACCCCACAATTGAATAACTCTGCCACAACTAAGCAACTCAGAAAAGACAAAAGCAATAAGACAGCTTGTGGCACTTCCATTCACGCTACACAATCCACACAAAAGTCAGTGTCACAGGCTAAAATAGATCATAATACAGAAGAAGCTCATCCAAGTTCAGATGTCATGGTCCAAGAAACACATCCCACTTCAGATGTCGTGGTCCAAGAACCACATCCTAGTTCAGATGTCAAGGCTCTACATCATGATTCAAAAGAAACTACTGAGGCAACTACAACCATGATTGATTCAAATCTAAACGATATGGTGGATAGGGCAGAGACGAGCAACCAACAGAATGCTGTGGCTAAAAGCAGTAATGATAAGACAGTGAATGAGGAAGAAGCAAGTAACAGGCAGTATGTTGAAACCAGTTACTTGGAGACAGTAGAAGAAGAGCCAATTAATGAGAACTATTCTGAAAGCAGTTATGATGATGAGATAGAGGATGAGGTAGAGGACATTGACCACAATTGTGATGAAACTAACTATGACTGGATCAGTGAAATTTCTAGGCCTCGGAGCTATTGGGAAGAGCGCAGGCAAGAATGGTACAGAGAGATGCTTGAAACTGGTTCTCACAATGAGGATATAAGGACGCTTCTTGAAAGAAGAACAGTGTCAAGTTTCCTTTCTAGTGACTTCCGGGAAAAAATGGATAGATTGATGGAATCTCACCGGGGAACACAAACACATTTGGTCAATATTCAAGACCAACAGGAAGACAGCCAAGGTATGATGGCATTTTTACAAGAACACTTGCATTCTGCAAGAGCTTCTCaagaagaaggaagagatgcaggggaggaagaagaggagaggagaaatcaggatgaggaagaggaagaagaagaggatgaggataatgcagatgagcaggagcaggagcaggagaaggagcatgaagaagaGAGCCTGATAAGTGGTTCATATCATGGAGTTGGTGATTATTCTAATAGATCCTCATCATGGAGTTACAGAGATAATGAAACTGGTGACGATTTTGATAGAGTTGATTCTACATCCCCACAAACTTATCAATCTCGATCATTCTATCCGGATAGTCGGCAGTCTCCATCTACCACTCATCATTCAATTGAAATGGAACTCATGTATGATTTGAGAGGGCAAATGGAGCAACTTTATCAGGAGATATCTGAGCTAAGGAAAACAATAAAGGGCTGCGTGGATATGCAGATGCAATTACAACAATCCATGAACCAAGAGGTTCACCCAGTTAAAAAAGAAGAAAAGAAGCCCCATAAGACTCCAAAGAAAGGCAACTGCTGCGTTTGCTATGAGATGAAAGTTGACTCCGTGCTGTACAGGTGTGGACACATGTGTGCGTGTCTCAAGTGTGCCAACGAGTTGCAATGGAACAGTGGAAAATGTCCTATATGTCGAGCTAAAATAGTGGATGTTGTTCGAGTATATGTTGACAATTAG 2853 0.4027 MASSEVEIASSSPFGCVLRDRNHREACRESNVKGTHNAATFQRNINNFVIDLNTCMAVSSDSTTNENNNSSSSDSNNNNSKQRKSPKNNHLERLCLTRSKTFNNNNNDNDNNKDESSLASLISPRHSRLLDRWAAKQAREMVSNLENEAELLSMDDNDTLPRTSSSTSEESSSETRNMGASSLVQIWEKRLNKSGMSKTNMSVDRITSSSSPNAVNENESENESENENANAFSVEEQCFDGPSNEEPFPDWDSSDHSVSPGGRSEKDRVSVADIIRKLTTTKQNQSPTPSFVDENEHEGYGGSCSVTGSSVTSSPCRERECGGVSTQQHVEQNQRINFSLRIRGRQAYNELLMHMENDRHREVNNLAERGAVSRFAQRGRIQAVLRLRLLQREVAANDPSRQKSTESEVNNNRQPPGGSAIIMQLRERFSSGAELRTPVQTEVANARSPQRETVNNTPQLNNSATTKQLRKDKSNKTACGTSIHATQSTQKSVSQAKIDHNTEEAHPSSDVMVQETHPTSDVVVQEPHPSSDVKALHHDSKETTEATTTMIDSNLNDMVDRAETSNQQNAVAKSSNDKTVNEEEASNRQYVETSYLETVEEEPINENYSESSYDDEIEDEVEDIDHNCDETNYDWISEISRPRSYWEERRQEWYREMLETGSHNEDIRTLLERRTVSSFLSSDFREKMDRLMESHRGTQTHLVNIQDQQEDSQGMMAFLQEHLHSARASQEEGRDAGEEEEERRNQDEEEEEEEDEDNADEQEQEQEKEHEEESLISGSYHGVGDYSNRSSSWSYRDNETGDDFDRVDSTSPQTYQSRSFYPDSRQSPSTTHHSIEMELMYDLRGQMEQLYQEISELRKTIKGCVDMQMQLQQSMNQEVHPVKKEEKKPHKTPKKGNCCVCYEMKVDSVLYRCGHMCACLKCANELQWNSGKCPICRAKIVDVVRVYVDN 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01636 950 SUPERFAMILY RING/U-box 897 943 - -
Cca08g01636 950 CDD mRING-HC-C3HC5_NEU1 897 937 - -
Cca08g01636 950 MobiDBLite consensus disorder prediction 434 468 - -
Cca08g01636 950 MobiDBLite consensus disorder prediction 724 831 - -
Cca08g01636 950 Coils Coil 135 155 - -
Cca08g01636 950 MobiDBLite consensus disorder prediction 725 741 - -
Cca08g01636 950 Coils Coil 840 860 - -
Cca08g01636 950 MobiDBLite consensus disorder prediction 60 119 - -
Cca08g01636 950 MobiDBLite consensus disorder prediction 95 119 - -
Cca08g01636 950 Pfam Zinc finger, C3HC4 type (RING finger) 895 942 - -
Cca08g01636 950 MobiDBLite consensus disorder prediction 148 267 - -
Cca08g01636 950 MobiDBLite consensus disorder prediction 507 526 - -
Cca08g01636 950 MobiDBLite consensus disorder prediction 531 545 - -
Cca08g01636 950 MobiDBLite consensus disorder prediction 396 418 - -
Cca08g01636 950 MobiDBLite consensus disorder prediction 432 545 - -
Cca08g01636 950 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 882 949 IPR013083 -
Cca08g01636 950 MobiDBLite consensus disorder prediction 781 795 - -
Cca08g01636 950 MobiDBLite consensus disorder prediction 60 84 - -
Cca08g01636 950 MobiDBLite consensus disorder prediction 564 590 - -
Cca08g01636 950 MobiDBLite consensus disorder prediction 397 418 - -
Cca08g01636 950 MobiDBLite consensus disorder prediction 807 831 - -
Cca08g01636 950 MobiDBLite consensus disorder prediction 157 182 - -
Cca08g01636 950 MobiDBLite consensus disorder prediction 742 768 - -
Cca08g01636 950 PANTHER BNAC05G24000D PROTEIN 1 949 - -
Cca08g01636 950 PANTHER BNAC05G24000D PROTEIN 1 949 - -
Cca08g01636 950 MobiDBLite consensus disorder prediction 192 233 - -
Cca08g01636 950 ProSiteProfiles Zinc finger RING-type profile. 898 937 IPR001841 -
Cca08g01636 950 Coils Coil 736 772 - -
Cca08g01636 950 MobiDBLite consensus disorder prediction 475 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01636 Cca-Chr8 47810979 47816208 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01636 898 946 C3H Transcription Factor Family AT3G06140 38.776 2.42e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01636 - - ccaj:109812885 1650.57