Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01625 ATGGAAGACTCTAGAGGTTTTAGTGGTGACGAGAAAATGCCATCCTACGAACTCACTTCCGATCAGCGAATTCAACTTATAGCTTTATTAGAGAGCAACCCAAATCTAGATGAAACCCAAGGAGATCAAATAGCCAAGGAGCTTGGACTTGACCCAAAACAAATAGAGCATTGGTTTCAGAACAAGAAGACAAAGGCTCCTACCATAGAACAAACCGATGAGGAAACTCAACAGTACTATGTTAGTGATCATGATGAAGCTGGTTGGAAGGAAATAGAACATATAGCAAAGGTTGCAGATGCTTCTATGGCCGAACTCTTGAAGCTTATAAGAGTGAATGGACCTTTATGGACCAAGTCTTCACATGGTGAGGGATATGTTCTCGTTAGTGAAAAATATGCAAACATGTTTCCTAGGGTTGATAGCTTGAACCGTCCTCACACTCGTGAAGAATCTTCAAAACATTATACAACAGTGAGGATTAGAGCAAGGCAATTGGTTGAGATGCTTTTAGATTCGGAGGAATGGGTTAATATTTTTCCAACGATTGTTTCACAAGCAGAAAAAGTCGTACTTGATCTCGGTTCATTGGATGATCGAAATGGAGCATTGCAAGTGGTGTATGAAAAAATGCACGGTATTTCACCTCTTGTGTCATCTCGGGAATTAGTCTTCCTTCGCTGTTGTCAAAAAATTGGAGAAGATGCATGGGCCATAGCTCATGTGTCAATTGATTCCTTCAGAGGGTGTTCCTATGATTTTCCTGCACGAAGGCTTCCATCTGGCTGCATGATTTATCAAATGACTAAAGAGTTTTGCATGGTTACTTGGATTGAGCACGTGGAAGTGAATGATAGAATAACACAAAGGGGTCATATTCGTAATAATATTGCATATGGAGCAGAAAGGTGGCTTTGGGCACTTCATAGAATGTGTGAGAGGTTTGCATGCACTTCAATGGAAAGTATTCCCCTTCAAGCGACTCAAGAAGTGGTGAATACATTCAATGCAATCAAGAAGTCCACGAAGTTTTCTGATCGAATGGTTCAGGGCTTTTGTCGAGTTTTGCATGAATCACGCCATGAGGGTTTTATACAAGAAAACAGTAATGCGATTAAGATCACTCTTCGCACGAACACAGCACCAGACATGCCTGAAGGCATAATTGCCACTGCTGTCACTTCGATAAGGCTACCTGTCCCTCCTCACCAAATTGTTAGCTTGCTCACGGAGGCAAGAAAACGTTCTAAGTGGGATGTTCTTAGCTGTGGACTTCCGGTGAACGAGCTTAGGCACTTCACAATTGGTGGAAGCCGTATCTCGATTTTAAAGATTTATAACCGAATAGAGAACGATGTGATGATATTTCAAGATAGTTATACAAATCCTTTGGGATCGTATGTGGTGTATGCCCCAATTTCTATGAAAAACGCGTGCTTGATTATGAATGGAGATGATCCAATGGTGCCAAAAGTTCTTCCTTCAGGATTTCTGATATCTAAAGACAATCGCACAATTGTTGAATCATCTAGTAGACAACATCCCAATAATAGATCAGGGGGCTCATTCTTAACTGTGGTTTACCAATTACTTCTTTGTAGCAATGAAGAATTAATTGGTGACATAAAAAGAGAAACTGTGGCTGGAATCGTCATCTCAATACTCCAAAAGATTAAGAACTCTTTCAATAATTCCAATTAG 1701 0.4045 MEDSRGFSGDEKMPSYELTSDQRIQLIALLESNPNLDETQGDQIAKELGLDPKQIEHWFQNKKTKAPTIEQTDEETQQYYVSDHDEAGWKEIEHIAKVADASMAELLKLIRVNGPLWTKSSHGEGYVLVSEKYANMFPRVDSLNRPHTREESSKHYTTVRIRARQLVEMLLDSEEWVNIFPTIVSQAEKVVLDLGSLDDRNGALQVVYEKMHGISPLVSSRELVFLRCCQKIGEDAWAIAHVSIDSFRGCSYDFPARRLPSGCMIYQMTKEFCMVTWIEHVEVNDRITQRGHIRNNIAYGAERWLWALHRMCERFACTSMESIPLQATQEVVNTFNAIKKSTKFSDRMVQGFCRVLHESRHEGFIQENSNAIKITLRTNTAPDMPEGIIATAVTSIRLPVPPHQIVSLLTEARKRSKWDVLSCGLPVNELRHFTIGGSRISILKIYNRIENDVMIFQDSYTNPLGSYVVYAPISMKNACLIMNGDDPMVPKVLPSGFLISKDNRTIVESSSRQHPNNRSGGSFLTVVYQLLLCSNEELIGDIKRETVAGIVISILQKIKNSFNNSN 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01625 566 SUPERFAMILY Bet v1-like 94 315 - -
Cca08g01625 566 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 17 564 - -
Cca08g01625 566 CDD homeodomain 18 65 IPR001356 GO:0003677
Cca08g01625 566 SUPERFAMILY Homeodomain-like 13 68 IPR009057 -
Cca08g01625 566 ProSiteProfiles START domain profile. 88 317 IPR002913 GO:0008289
Cca08g01625 566 ProSiteProfiles 'Homeobox' domain profile. 9 69 IPR001356 GO:0003677
Cca08g01625 566 Pfam START domain 98 314 IPR002913 GO:0008289
Cca08g01625 566 Pfam Homeodomain 18 65 IPR001356 GO:0003677
Cca08g01625 566 SMART START_1 97 314 IPR002913 GO:0008289
Cca08g01625 566 Gene3D - 93 313 IPR023393 -
Cca08g01625 566 SUPERFAMILY Bet v1-like 342 528 - -
Cca08g01625 566 Gene3D - 5 81 - -
Cca08g01625 566 SMART HOX_1 12 73 IPR001356 GO:0003677
Cca08g01625 566 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 17 564 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01625 Cca-Chr8 47431816 47438281 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01625 77 563 Homeobox Transcription Factor Family AT3G61150 32.480 4.78e-77 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca08g01625 START 2e-21 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01625 K09338 - gmx:102667038 542.732