Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01624 ATGGCTTCTTCTTTTCCTCTTTACCAACCAACCCACACCATATTCTCCAACACCCAGTTCAAAGGTTCGCGCCGTGGCTTCTTGTGGCGACCCACTTACCCGTTTGGCTCTCACGCCGAAAACAAAGCTCGACCCATCAAAGCTTCGGTTGATGCACCCCCGTTTCCCCTGTTTCAGCCTCCCCAAGTTGAAGAGTCATCGTCTGAGTTGGAGCCGGCTGATCCTGATTTCTACAAGATTGGTTATGTCCGAAGCATGCGAGCTTATGGAGTTCAGTTTAAAGAAGGTCCAGATGGTTTTGGTGTGTATGCTTCTAAAGATGTAGAGCCTCTTCGTCGAGCAAGGGTTATAATGGAAATTCCTCTTGAACTGATGTTAACCATAAGCAAGAAGCTCCCATGGATGTTTTTCCCTGATATAATCCCTTTGGATCATCCAATATTTGATATTATCAACTCGACAAATCCAGAGACAGATTGGGACCTAAGGTTGGCATGCCTTCTCTTGTATGCATTTGACTGTGAAGGCAACTTTTGGCAATTGTATGGTGACTTCTTACCAAGTGCAGATGAGTGCACCAGCTTACTTCTAGCTTCAGAGGAGGAACTTTTGGAGCTGCAGGATCCCAATCTTGCTTCTACTATTAGAAAACAGCAATTACGAGCCTTAGAATTCTGGGAGAAAAACTGGCACTGTGATGCACCCCTTAAAATAAAGCGTCTTGCTCGTGATCCACAAAGATTCACTTGGGCAGTAAGTATTGCACAGTCACGGTGTATTAACCTGAAAACGAGAATTGGTGCTCTAAATCAAGAAGCAAATATGTTGATTCCTTATGCAGATATGTTGAACCATTCTTTTGAGCCAAATTGTTTTTTCCATTGGCGTTTTAAGGACAGGATGCTTGAGGTTCTTACAAATGCTGGACAGCGCATTAGAAAGGGAGATGAGATGACAGTTGATTACATGAGTTCGCAGAAGAATGACGCATTCATGCAAAGATTTGGATTTTCGTCACCTGTGAATCCTTGGGACGAGATCAAATTCTCAGGCAATGCACGTATTCATTTGGATTCCTTCTTGTCAATCTTCAATATATCTGGCCTTCCAGAAGAGTATTACCATAACAACTGTCTATCAAATCCCGGAGATACGTTTGTTGATGGAGCTGTTATAGCTGCAGCACGAACATTGCCAACTTGGTCAGACAGGGATGTGCCACCTATCCCTAGCGTTGAAAGAAAGGCCACAAAGGAGCTGCAAGATGAATGCCGTAAAATGCTTGCCGGATTCGCTACAACCTCTAAGCAAGACCAAAAGTTGCTAGATTCCATGACAGATGCTACCAGGACACTTGAAACTGCAATAAAGTATAGATTGCATAGGAAATTGTTCATGGATAAAGTTATCCAAGCATTGGAGATTTATCAAGAGCAAATACTGTTCTGA 1449 0.432 MASSFPLYQPTHTIFSNTQFKGSRRGFLWRPTYPFGSHAENKARPIKASVDAPPFPLFQPPQVEESSSELEPADPDFYKIGYVRSMRAYGVQFKEGPDGFGVYASKDVEPLRRARVIMEIPLELMLTISKKLPWMFFPDIIPLDHPIFDIINSTNPETDWDLRLACLLLYAFDCEGNFWQLYGDFLPSADECTSLLLASEEELLELQDPNLASTIRKQQLRALEFWEKNWHCDAPLKIKRLARDPQRFTWAVSIAQSRCINLKTRIGALNQEANMLIPYADMLNHSFEPNCFFHWRFKDRMLEVLTNAGQRIRKGDEMTVDYMSSQKNDAFMQRFGFSSPVNPWDEIKFSGNARIHLDSFLSIFNISGLPEEYYHNNCLSNPGDTFVDGAVIAAARTLPTWSDRDVPPIPSVERKATKELQDECRKMLAGFATTSKQDQKLLDSMTDATRTLETAIKYRLHRKLFMDKVIQALEIYQEQILF 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01624 482 Gene3D - 378 480 IPR036464 -
Cca08g01624 482 ProSiteProfiles SET domain profile. 78 323 IPR001214 GO:0005515
Cca08g01624 482 CDD SET_LSMT 90 337 - -
Cca08g01624 482 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 334 474 IPR036464 -
Cca08g01624 482 Gene3D set domain protein methyltransferase, domain 1 83 337 - -
Cca08g01624 482 SUPERFAMILY SET domain 98 338 IPR046341 -
Cca08g01624 482 Pfam SET domain 99 322 IPR001214 GO:0005515
Cca08g01624 482 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 51 475 - -
Cca08g01624 482 PANTHER PROTEIN PLASTID TRANSCRIPTIONALLY ACTIVE 14 51 475 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Cca08g01624 SET 5.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01624 - - gmx:100786962 908.286