Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01605 ATGGCGCCGGTGGCCGGTGGCCTGCAGCTCACTTCCCTCGCCGGCGACTCCGATGAGCTCGAGGACGTGCGCCTCTTGGACTCCTTCGACCGAATCGACGGCGGAGCCAGGCGGATTCAGGTGACGGTCACCGGCATGACCTGCGCCGCCTGCTCCAATTCCGTCGAATCAGCTCTCAAATCGCTCGACGGCGTTCTCAGCGCCTCCGTCGCGCTGCTTCAGAACAAAGCCGACGTCGTTTTCAATCCGGCTCTGCTCAAGGATGAAGACATAAAAAATGCAATTGAAGATGCTGGATTTGAAGCGGACATATTACCTGACTCCAGTACAGTTGGAAAGATGCCACATGGAACTCTGGTGGGACAGTTCACCATTGGAGGTATGACATGTGCAGCATGTGTAAATTCTGTTGAAGGTATTTTAAGAAATCTTCCAGGGGTCAAAAGGGCTGTGGTAGCTTTGGCTACTTCGTCAGGTGAAGTTGAATATGATCCCAGTGTAATTAGTAAAGATGACATAGTCAATGCAATTGAAGATTCTGGTTTTGAAGCTTCATTTATACAAAGCAATGAGCAGGATAAAATAATTTTAGGGGTGATTGGTGTGTACAGTCTGATTGACGCACAAGTTTTGGAAGGCATTCTTGGCAGCACAAAAGGTGTAAGGCAGTTTCATTTTGACCAGATTTCAAGTGAATTAAATGTTCTGTTTGATCCTGAAGTTCTCAGTTCTAGATCCGTAGTTGATGCAATCCAGGGGGGAAGCAATGGAAAGTTTAAATTACATGTTAGAAACCCTTATACAAGGATGGCTTCTAAAGATGTTGAAGAAACCTCAACTATATTTCGGCTCTTTATCTCCAGTCTGTTTCTTAGTATTCCTCTCTTCTTCATGAGGGTAGTTTGTCCTCACATACCACTAGTGTATTCCTTGTTACTTCGGCGATGTGGGCCTTTCATGATGGGTGATTGGTTGAAATGGGCATTAGTGAGTGTCATCCAATTTGTGATTGGTAAGCGCTTCTACATTGCAGCTGGCAGAGCTCTTAGAAATGGTTCAACAAACATGGATGTCCTGGTTGCTGTGGGAACTACCGCTTCTTATGTTTATTCTGTTTGTGCTCTTCTATATGGTGCTCTTACTGGATTTTGGTCCCCAACTTACTTTGAAACAAGTGCCATGCTCATAACATTTGTATTGTTGGGCAAGTATTTGGAATGCCTTGCCAAGGGAAAGACATCTGATGCTATCAAGAAATTAGTAGAACTTGCTCCTGCAACAGCGTTATTAGTTGTCAAAGATAAAGGTGGTAAATCTATTGAAGAAAGGGAAATTGATTCTTTGCTTATTCAACCTGGTGACACATTGAAAGTTCTTCCTGGTACAAAGATTCCCGCTGATGGTATTGTTACTTGGGGCTCAAGTTATGTAAATGAGAGCATGGTAACTGGTGAATCTGAACCTATTTTAAAGGAGGTGAATGCTTCCGTTATTGGAGGTACTATAAATTTGCATGGCGCCCTTCACATTCAAACTACCAAAGTAGGATCTGATACAGTTTTGAGTCAGATTATTAGTTTGGTTGAGACAGCCCAGATGTCCAAAGCTCCCATTCAGAAGTTTGCTGATTATGTAGCAAGCATATTTGTTCCTTCAGTTGTTTCTTTGGCATTATTGACATTATTGGGTTGGTATATTGCTGGGTCTGTTGGAGCTTACCCAGAAGAATGGCTGCCAGAAAATGGAAATCACTTTGTTTTTGCTCTAATGTTCTCAATATCTGTAGTAGTGATTGCATGTCCCTGTGCGCTTGGCTTGGCAACACCAACAGCTGTCATGGTGGCAACAGGGGTTGGAGCTAACAGTGGAGTGTTAATTAAAGGAGGAGATGCCTTGGAAAGGGCTCAGAAGGTGAAGTATGTGATATTTGATAAAACAGGCACTCTAACTCAGGGAAAGGCCACTGTTACTACTGCCAAGACATTCACAGGAATGGAACGTGGAGATTTTCTTAAATTGGTGGCTTCTGCTGAGGCTAGCAGTGAACATCCATTAGCAAAAGCGATATTAGCATATGCACGGCATTTTCATTTCTTTGATGACTCTTCTGCTACTACTGGTACTGAGAATGGTGCAAAGTCTGGGTGGCTTTTTGATGTTTCAGACTTCTCTGCCATTCCTGGAAGAGGTGTTCAATGTTTTATAGATGGGAAGCGTGTTTTGGTTGGTAACAGGAAGTTGATGGTGGAAAATGGCATAGATATTTCAACAGAAGTGGAAAATTTTGTGGTAGAGCTGGAAGAAAGTGCCAAGACAGGGATACTAGTAGCATATAATGATACATTAACTGGAGTCCTGGGGATTGCAGACCCACTAAAGAGAGAAGCTTCTGTAGTCATAGAGGGCCTCCAGAAAATGGGTGTCACTCCTGTTATGGTCACAGGAGACAACTGGAGAACCGCTCGTGCTGTTGCAAAGGAGGTTGGCATCCAAGATGTTAGGGCAGAGGTCATGCCAGCAGGAAAAGCTGACGTAGTTCGATCATTCCAAAAGGATGGGAGCATAGTCGCGATGGTGGGTGATGGTATCAATGATTCTCCTGCATTAGCTGCTGCCGATGTTGGTATGGCAATTGGAGCCGGAACTGACATTGCAATAGAAGCTGCTGACTATGTGCTGATGAGAAACAACTTAGAAGATGTGATCACAGCAATCGATCTTTCATGCAAGACTTTTTCTCGTATTCGATTAAATTATGTGTTTGCAATGGCTTACAATGTTGTGGCAATACCAGTTGCTGCTGGTGTGTTTTATCCTTCACTGGGGATCAAGCTGCCACCATGGGTTGCAGGTACATGCATGGCTCTCTCTTCTGTAAGTGTTGTGTGCTCTTCTTTGCTTCTTAAAAGATATAGAAGACCCAGACTTACTACAATACTTGAAATAGTTGTAGAATAA 2958 0.4368 MAPVAGGLQLTSLAGDSDELEDVRLLDSFDRIDGGARRIQVTVTGMTCAACSNSVESALKSLDGVLSASVALLQNKADVVFNPALLKDEDIKNAIEDAGFEADILPDSSTVGKMPHGTLVGQFTIGGMTCAACVNSVEGILRNLPGVKRAVVALATSSGEVEYDPSVISKDDIVNAIEDSGFEASFIQSNEQDKIILGVIGVYSLIDAQVLEGILGSTKGVRQFHFDQISSELNVLFDPEVLSSRSVVDAIQGGSNGKFKLHVRNPYTRMASKDVEETSTIFRLFISSLFLSIPLFFMRVVCPHIPLVYSLLLRRCGPFMMGDWLKWALVSVIQFVIGKRFYIAAGRALRNGSTNMDVLVAVGTTASYVYSVCALLYGALTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLVVKDKGGKSIEEREIDSLLIQPGDTLKVLPGTKIPADGIVTWGSSYVNESMVTGESEPILKEVNASVIGGTINLHGALHIQTTKVGSDTVLSQIISLVETAQMSKAPIQKFADYVASIFVPSVVSLALLTLLGWYIAGSVGAYPEEWLPENGNHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANSGVLIKGGDALERAQKVKYVIFDKTGTLTQGKATVTTAKTFTGMERGDFLKLVASAEASSEHPLAKAILAYARHFHFFDDSSATTGTENGAKSGWLFDVSDFSAIPGRGVQCFIDGKRVLVGNRKLMVENGIDISTEVENFVVELEESAKTGILVAYNDTLTGVLGIADPLKREASVVIEGLQKMGVTPVMVTGDNWRTARAVAKEVGIQDVRAEVMPAGKADVVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNNLEDVITAIDLSCKTFSRIRLNYVFAMAYNVVAIPVAAGVFYPSLGIKLPPWVAGTCMALSSVSVVCSSLLLKRYRRPRLTTILEIVVE 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01605 985 Gene3D - 609 916 IPR023214 -
Cca08g01605 985 SUPERFAMILY HAD-like 641 965 IPR036412 -
Cca08g01605 985 ProSitePatterns E1-E2 ATPases phosphorylation site. 644 650 IPR018303 -
Cca08g01605 985 SFLD p-type atpase 624 908 IPR044492 -
Cca08g01605 985 ProSiteProfiles Heavy-metal-associated domain profile. 120 186 IPR006121 GO:0046872
Cca08g01605 985 Gene3D - 36 107 - -
Cca08g01605 985 Pfam haloacid dehalogenase-like hydrolase 638 873 - -
Cca08g01605 985 ProSiteProfiles Heavy-metal-associated domain profile. 38 104 IPR006121 GO:0046872
Cca08g01605 985 CDD P-type_ATPase_Cu-like 283 955 - -
Cca08g01605 985 SFLD Haloacid Dehalogenase 624 908 - -
Cca08g01605 985 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 356 968 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cca08g01605 985 PANTHER HEAVY METAL P-TYPE ATPASE 11 978 - -
Cca08g01605 985 SUPERFAMILY HMA, heavy metal-associated domain 116 191 IPR036163 GO:0046872
Cca08g01605 985 Gene3D - 121 186 - -
Cca08g01605 985 SUPERFAMILY Calcium ATPase, transmembrane domain M 379 634 IPR023298 -
Cca08g01605 985 SUPERFAMILY HMA, heavy metal-associated domain 34 106 IPR036163 GO:0046872
Cca08g01605 985 ProSitePatterns Heavy-metal-associated domain. 43 73 IPR017969 GO:0046872
Cca08g01605 985 Gene3D - 649 738 IPR023299 GO:0000166
Cca08g01605 985 Gene3D - 739 790 IPR023299 GO:0000166
Cca08g01605 985 CDD HMA 122 185 IPR006121 GO:0046872
Cca08g01605 985 PANTHER ATP7, ISOFORM B 11 978 - -
Cca08g01605 985 PRINTS Copper-transporting ATPase 1 signature 38 63 - -
Cca08g01605 985 PRINTS Copper-transporting ATPase 1 signature 64 87 - -
Cca08g01605 985 PRINTS Copper-transporting ATPase 1 signature 93 113 - -
Cca08g01605 985 CDD HMA 40 102 IPR006121 GO:0046872
Cca08g01605 985 SUPERFAMILY Calcium ATPase, transduction domain A 442 528 IPR008250 -
Cca08g01605 985 TIGRFAM TIGR00003: copper ion binding protein 39 102 IPR006122 GO:0005507
Cca08g01605 985 TIGRFAM TIGR00003: copper ion binding protein 122 184 IPR006122 GO:0005507
Cca08g01605 985 Pfam E1-E2 ATPase 425 620 - -
Cca08g01605 985 ProSitePatterns Heavy-metal-associated domain. 125 154 IPR017969 GO:0046872
Cca08g01605 985 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 720 941 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca08g01605 985 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 395 669 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca08g01605 985 Pfam Heavy-metal-associated domain 123 183 IPR006121 GO:0046872
Cca08g01605 985 Pfam Heavy-metal-associated domain 41 101 IPR006121 GO:0046872
Cca08g01605 985 Gene3D - 410 532 - -
Cca08g01605 985 PRINTS P-type cation-transporting ATPase superfamily signature 478 492 - -
Cca08g01605 985 PRINTS P-type cation-transporting ATPase superfamily signature 642 656 - -
Cca08g01605 985 PRINTS P-type cation-transporting ATPase superfamily signature 784 795 - -
Cca08g01605 985 PRINTS P-type cation-transporting ATPase superfamily signature 806 816 - -
Cca08g01605 985 PRINTS P-type cation-transporting ATPase superfamily signature 859 878 - -
Cca08g01605 985 PRINTS P-type cation-transporting ATPase superfamily signature 882 894 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01605 Cca-Chr8 47175743 47183197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01605 1 985 Primary Pumps ATPases AT5G44790 74.751 0.0 1501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01605 K17686 - gmx:100804960 1775.37