Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01604 ATGGTGAAGTTTCTGAAAGCGAACAAAGCGGTGATCGTGCTGCAGGGGCGTTACGCGGGAAAGAAGGCGGTGATAGTCCGAAGCTTCGACGAGGGAACGCGCGAGCGCCCCTACGGCCACTGCCTGGTTGCGGGGATAAAGAAGTACCCAAGCAAGGTCATCAAGAAGGACTCCGCCAAGAAGACCGCCAAGAAGTCCCGCGTCAAGGCCTTCCTCAAGTTGGTCAACTACCAGCACCTCATGCCCACGCGCTACACGCTCGACGTCGACCTCAAGGACGCCGTCACCCCCGACGCCCTCCACGCCAAGGATAAGAAGGTCACCGCCCTCAAGGAGACCAAGAAGCGCCTCGAGGACCGCTTCAAGACCGGCAAGAACCGGTGGTTCTTCACCAAGCTCAGAACAACTTTCTTGCTTTTGAATCACTTGAGGCTGTGCTGCATTTGGGATTAA 453 0.5717 MVKFLKANKAVIVLQGRYAGKKAVIVRSFDEGTRERPYGHCLVAGIKKYPSKVIKKDSAKKTAKKSRVKAFLKLVNYQHLMPTRYTLDVDLKDAVTPDALHAKDKKVTALKETKKRLEDRFKTGKNRWFFTKLRTTFLLLNHLRLCCIWD 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01604 150 Gene3D - 1 135 IPR038655 -
Cca08g01604 150 PANTHER 60S RIBOSOMAL PROTEIN L27 1 134 - -
Cca08g01604 150 CDD KOW_RPL27 6 88 IPR041991 -
Cca08g01604 150 Pfam Ribosomal L27e protein family 52 134 IPR001141 GO:0003735|GO:0005840|GO:0006412
Cca08g01604 150 SUPERFAMILY Translation proteins SH3-like domain 3 134 IPR008991 -
Cca08g01604 150 Coils Coil 100 127 - -
Cca08g01604 150 PANTHER 60S RIBOSOMAL PROTEIN L27 1 134 IPR001141 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01604 Cca-Chr8 47152884 47153826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01604 1 134 Cytoplasmic Ribosomal Protein Gene Family AT3G22230 83.582 2.98e-79 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01604 K02901 - gmx:100793982 241.121