Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01603 ATGGTCTTCTCAACTGCCTTTCTTCAGGAAGATGGCACCTTCTTTTCTAGAAAAAGGCCAAGGGTGCCAGATCTTGGACATCAAGATATAGATTTACATGCAGATGCAGGAATTTCCAGTGATATTTCTTTGTTCTCACATCAAAATATAGAAAGGTGCAGGAGTACTGGTGATGTTCCCTCTTCCAGCAATACTGACGACAAAGTTGATCCAGATTCTGGAATGGAGACGAGCTGCCCGTCAAATGTTAATAGTGGCCATGTTCCTGTGTGTTCTACTGCAGGGAATGTTTCACACATGGACCAGAGTTTCTGTGGTTATGTGCAACAGCCTGCTTTTGTGAGTGGATGGATGTATGTGAATGAAAATGGGCAAATGTGTGGTCCCTATATTAAGGAGCAGTTATATGAGGGCCTAACTACTGGTTTCTTGCCATCTGAGCTTCCTGTGTATCCAGTGATTAATGGCACAATAATGAACCCTGTACCTCTGAATTACTTTAAACAGTTCCCTGATCATGTTTCCACTGGGTTTGCATATCTGAGTATGGGCATCTCAGGCACAAGTATGCCTACCACAGCAGTATGTGAGCAAGATAGACCTTTTGAGCATGCTGTGCCCGTGGCTGTTAagtctgagtcacagtcagtttcacagtcaaatgtcaATTACTGCATTAAGGAATCTAATCACTTAAATTCAAACTCAGAGACATTCAATGGTTTAATATCTTTTCAGATGTTACGTGAAGAATGCTGTTGGCTTTATGAGGATGAGGAGGGTATGAAACATGGGCCACATGTTATTCATGAATTGATTTCCTGGTATTGTCATGGATATCTTAAAGATTCAACAGTGATCTCTCATTCTGACAAGAAGTATGGCACCTTTGTGCTATTATCTGCTGTAAATGCATTAAGAGAAGACACATCTGGAACCATTTGTAGATCAGGTTCCACAAGTAATGAGGTTGGTGATGTGGTCAACATGATTAGTGAAATATCTGAAAACATTTCTTCCCAATTGCACATGGGTATCATGAAAGCTGCTCGCAGAGTTGTGCTAGATGGAATTATTGGCGATATCATTGCAGAATTTGTTACTGAAAAGAAACGTAAGAGGCATAAGCTTGAATCAGTTGACTGTACTCCTGAAAACAAGATGAGTAAATTCTCTGTGAAAATCAGTAAAGGTTCTGCTATTCCCTGTGATCCTGCATCTTCCCACATTTTGGACGATCAGACTTGCCATGAAAGTTCCAGACTGCCCTCATCCAGTATCAAATCAGTTGGAAGCATTGAAAATTTTTGGTGGTCATATGCTGTTGTTCGCAAGGTACTTCTTGATTATTGCATGCAAGTCATGTGGAATTCTGTATTTTTTGACACAATAGCAGAATACTTATCTTCCTGGAGGAAGAGGAAGCTTTGGTCTCATCCTAAGCCTCGATCATCTGCTAATGGATGTAAAGATCAAACTGAAAAGATTGAATCAGAAGCTTTGGTTCTCAACCCAGATTCTTCTGAATGCAATGCTGATGGCTATAATCAGTTTGGAGTACTGGTGGAAGAAAGAAGTTGTCTTCAGTTATTTTCATCTCCTAGTGGCCTCAAAGGTGAAAACTTACTAGAAGGTCAAAAAGTTTCATGCCCTTATTACAACTCTAAAGATTTGACATGCATTATTGAAAGTGTGGAGAATGAGCTTCACTTCTCTTCAAAGGTGTCTTTAGCTGATTACATCCAAAGTTTTGTCGAAAAGGAAGTGAACAAATTAATTCCTTCTCCTGAAGAAAACAAATTGAATGAGGTTGCTGTTAGTGACACTCGTTTTTCAGAGATACTTGCTGATAAAATGTCTGTAAAGGAAATCCCAAATAACAAGTCTGTGGATTCTGTAAAAGCTGGAAATTCATTTGGCGAGTCTGCATTTGGCAACCATATGTCTGATGTATTTTCAAAAGCATTTAAAGAGTTGAATGGCTTTGTAGACGATGATGTGGTTGAAGAGGAGATTGATGACCTACCACCTGGACTTGAAGAGAAATCTCAAACAGTTTTCCCGCACTACAATTCAAAATTTCGACCATCAAGGTTGGTTGAATGTAATCCTAAGATTACAGGATATGTTGCAACTGCACTGTGCCGACAGAAACTACATGATGAGGTTCTAGAAGAGTGGAAGTCGTTGTTTCTTGATTTTGTGCTCAATCAAGTTTTTATATCATCACCCACCATAAAGAAACATTTTAAGTCTGATGGTCATGAGAAAGGAAAAACGTTCAAAGTAAGCAAGAAACATTTGAATGGTGCTACTTCTGGACTGGGAAGAGTGAATGAAGGAGCCAAGATTTCTTCTGAAGTTCCTCTGGTGAATGGAAAGAATACTTATTACCGCAAGAAGGTGTCACGAAAGGAGTTATTTTCCTCACCATCTGTAGCAGAAAATGGTTCAAGTTCAGGGAAGCAGCCCATGGCCAAGTTGAGGAAACATGTTTCTGGAGATGTCAAAGAGGCTGCTGAGGTTAAAATAGCTGCTGTTAAATGTGGAAAGACTAAGATTCTTAAAGGGAAGAAGGACACATCTTCTAAGGGAAGTTCTTCTGTTGGTGTCAATAGTAGCTCACACAGTGATCAGTTATCTCTAAAGAATAAAGCTGATCGGAAAGTGTTGAAGTTTTCAGATGATGTTGTGGATGTTAAAAAATCCAATGGAAAGAAGCTTTCAGTGTCAACTGATCTTAGTCTTGGCAGGAAGAAGGTTGACAAAAGTGATGGTTTTGAAGGCACTGTTAAGGAGAAGACCACAGGTCATTGCTCTAGAGAAATACAAAATGCAACAAATAGAGTATCAAAATCAAAAAGGAAACATCAAATGGATGGTACAGAATCTTCACATTCTAGAAAGGTTTTGAAAATTTCAAATGGCAGTGCTTTTCTGGGAGCTAGTAAACAGGTTACTGTGGCAAGGAGGAAGTCTGCTAAATCCAAGCCATTGAAGTTGTGTCCTAGATCCGAAGGATGTGCTAGGACTTCTATTGATGGTTGGGAATGGCATAAATGGTCTCGAAGTGCCACTCCTGCATATAAAGCACGTGTTAGGGGTCTTCCGTGTGTCCAGAACAAGTGCATATATTCTGAAAATAATTTATCTCACTTGTCAAGTGGTAAGGGTCTTTCTGCAAGAACAAATAGAGTGAAACTGCGTAACCTTCTTGCTGCTGCAGAGGGTGCAGATCTTCTGAAAGTGCCTCAATTGAAGGCACGGAAGAAGCGACTGCGTTTTCAAAGGAGCAAGATCCATGACTGGGGTCTTGTTGCCTTGGAGCCAATTGAGGCAGAGGACTTTGTGATTGAATATATTGGGGAGCTAATTCGTCCTCGGATATCTGATATACGTGAACGTCAATATGAGAAAATGGGAATTGGAAGCAGTTACCTTTTTAGACTTGATGATGGTTATGTGGTTGATGCTACAAAGAGAGGTGGGATTGCAAGATTTATTAACCACTCTTGTGAGCCCAATTGCTATACAAAGGTTATATCTGTTGAGGGTCAAAAGAAGATTTTCATATATGCGAAACGACATATAGTTGCAGGTGAAGAAATTACATACAATTATAAGTTCCCCTTGGAGGAGAAAAAGATTCCCTGTAACTGTGGTTCCAGAAAGTGTCGTGGATCACTGAATTAG 3693 0.3951 MVFSTAFLQEDGTFFSRKRPRVPDLGHQDIDLHADAGISSDISLFSHQNIERCRSTGDVPSSSNTDDKVDPDSGMETSCPSNVNSGHVPVCSTAGNVSHMDQSFCGYVQQPAFVSGWMYVNENGQMCGPYIKEQLYEGLTTGFLPSELPVYPVINGTIMNPVPLNYFKQFPDHVSTGFAYLSMGISGTSMPTTAVCEQDRPFEHAVPVAVKSESQSVSQSNVNYCIKESNHLNSNSETFNGLISFQMLREECCWLYEDEEGMKHGPHVIHELISWYCHGYLKDSTVISHSDKKYGTFVLLSAVNALREDTSGTICRSGSTSNEVGDVVNMISEISENISSQLHMGIMKAARRVVLDGIIGDIIAEFVTEKKRKRHKLESVDCTPENKMSKFSVKISKGSAIPCDPASSHILDDQTCHESSRLPSSSIKSVGSIENFWWSYAVVRKVLLDYCMQVMWNSVFFDTIAEYLSSWRKRKLWSHPKPRSSANGCKDQTEKIESEALVLNPDSSECNADGYNQFGVLVEERSCLQLFSSPSGLKGENLLEGQKVSCPYYNSKDLTCIIESVENELHFSSKVSLADYIQSFVEKEVNKLIPSPEENKLNEVAVSDTRFSEILADKMSVKEIPNNKSVDSVKAGNSFGESAFGNHMSDVFSKAFKELNGFVDDDVVEEEIDDLPPGLEEKSQTVFPHYNSKFRPSRLVECNPKITGYVATALCRQKLHDEVLEEWKSLFLDFVLNQVFISSPTIKKHFKSDGHEKGKTFKVSKKHLNGATSGLGRVNEGAKISSEVPLVNGKNTYYRKKVSRKELFSSPSVAENGSSSGKQPMAKLRKHVSGDVKEAAEVKIAAVKCGKTKILKGKKDTSSKGSSSVGVNSSSHSDQLSLKNKADRKVLKFSDDVVDVKKSNGKKLSVSTDLSLGRKKVDKSDGFEGTVKEKTTGHCSREIQNATNRVSKSKRKHQMDGTESSHSRKVLKISNGSAFLGASKQVTVARRKSAKSKPLKLCPRSEGCARTSIDGWEWHKWSRSATPAYKARVRGLPCVQNKCIYSENNLSHLSSGKGLSARTNRVKLRNLLAAAEGADLLKVPQLKARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYIGELIRPRISDIRERQYEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCEPNCYTKVISVEGQKKIFIYAKRHIVAGEEITYNYKFPLEEKKIPCNCGSRKCRGSLN 1230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01603 1230 MobiDBLite consensus disorder prediction 861 880 - -
Cca08g01603 1230 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 49 1230 - -
Cca08g01603 1230 MobiDBLite consensus disorder prediction 54 81 - -
Cca08g01603 1230 MobiDBLite consensus disorder prediction 809 823 - -
Cca08g01603 1230 Gene3D - 244 326 IPR035445 -
Cca08g01603 1230 Gene3D - 107 178 IPR035445 -
Cca08g01603 1230 ProSiteProfiles GYF domain profile. 251 301 IPR003169 GO:0005515
Cca08g01603 1230 ProSiteProfiles SET domain profile. 1091 1208 IPR001214 GO:0005515
Cca08g01603 1230 CDD SET_SETD1 1079 1226 - -
Cca08g01603 1230 MobiDBLite consensus disorder prediction 947 968 - -
Cca08g01603 1230 MobiDBLite consensus disorder prediction 809 832 - -
Cca08g01603 1230 SMART PostSET_3 1214 1230 IPR003616 -
Cca08g01603 1230 SUPERFAMILY SET domain 1087 1227 IPR046341 -
Cca08g01603 1230 SMART set_7 1091 1214 IPR001214 GO:0005515
Cca08g01603 1230 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 49 1230 IPR044570 GO:0042800|GO:0051568
Cca08g01603 1230 MobiDBLite consensus disorder prediction 855 884 - -
Cca08g01603 1230 Gene3D SET domain 1037 1230 IPR046341 -
Cca08g01603 1230 Pfam SET domain 1103 1207 IPR001214 GO:0005515
Cca08g01603 1230 ProSiteProfiles Post-SET domain profile. 1214 1230 IPR003616 -
Cca08g01603 1230 MobiDBLite consensus disorder prediction 953 967 - -
Cca08g01603 1230 MobiDBLite consensus disorder prediction 54 68 - -
Cca08g01603 1230 SUPERFAMILY GYF domain 247 303 IPR035445 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01603 Cca-Chr8 47126053 47140396 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01603 1090 1230 C2H2 Transcription Factor Family AT2G23740 36.810 1.29e-18 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Cca08g01603 SET 7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01603 - - gmx:100805708 2006.49