Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01599 ATGGCGACCAAGTTTTTAGCGTTAGCATGTTTACGTAACAGTGAGGGGCCGAGACCTCACTACCCGTCCATGCCTCGATACCCAAAGGGCGTGACGGAAGAAGAAGGAAGCAGCAACGTATCGTCCAAAGCACTTTTCTCGGTCACCGGAATGACTTGCTCCGCCTGTGCCGCCTCCGTCGAGAAAGCCGTCAAGCGCCTTCCCGGAATCCGCCAAGCCGTCGTTGATGTTCTCAACAACCGTGCACAAGTTCTCTTCTACCCTTCCTTTGTTAATGCTTCAGTGTTCATTCACCCTAACAACCAATTCTCCCACACCCTACACAGCTCAAAAGGTGTGCTAATTGTCAAAATCCTATATGATGCCTTGCCATACCACCTTCTAAGTGTTATTCATCCCAATGAGTGA 408 0.5 MATKFLALACLRNSEGPRPHYPSMPRYPKGVTEEEGSSNVSSKALFSVTGMTCSACAASVEKAVKRLPGIRQAVVDVLNNRAQVLFYPSFVNASVFIHPNNQFSHTLHSSKGVLIVKILYDALPYHLLSVIHPNE 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01599 135 ProSiteProfiles Heavy-metal-associated domain profile. 43 92 IPR006121 GO:0046872
Cca08g01599 135 Gene3D - 38 117 - -
Cca08g01599 135 PANTHER ATP7, ISOFORM B 1 94 - -
Cca08g01599 135 CDD HMA 46 89 IPR006121 GO:0046872
Cca08g01599 135 Pfam Heavy-metal-associated domain 46 86 IPR006121 GO:0046872
Cca08g01599 135 SUPERFAMILY HMA, heavy metal-associated domain 43 95 IPR036163 GO:0046872
Cca08g01599 135 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 1 94 - -
Cca08g01599 135 ProSitePatterns Heavy-metal-associated domain. 48 77 IPR017969 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01599 Cca-Chr8 47059879 47064530 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01599 1 92 Primary Pumps ATPases AT1G63440 48.515 7.85e-23 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01599 K17686 - gmx:100789164 176.022