Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01598 ATGGAGGAGGCACATAAAGACAAAGAGAGAGAAGGGGAAGAAGTGAGGTACCGTGGTGTGAGAAAGAGGCCATGGGGTAAGTATGGTGCAGAAATTAGAGACCCTACAAAACCTACGGGAAGACAATGGTTAGGAACATTTGACACAGCAGAAGAAGCAGCTAGAGCTTATGATCGTGCAGCCATTGTACCAGGTTTTGTGACCGTTAAG 210 0.4667 MEEAHKDKEREGEEVRYRGVRKRPWGKYGAEIRDPTKPTGRQWLGTFDTAEEAARAYDRAAIVPGFVTVK 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01598 70 PANTHER DNA-BINDING DOMAIN 1 62 IPR044808 GO:0003700|GO:0009873
Cca08g01598 70 SMART rav1_2 16 69 IPR001471 GO:0003700|GO:0006355
Cca08g01598 70 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Cca08g01598 70 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Cca08g01598 70 Gene3D AP2/ERF domain 15 64 IPR036955 GO:0003700|GO:0006355
Cca08g01598 70 SUPERFAMILY DNA-binding domain 16 62 IPR016177 GO:0003677
Cca08g01598 70 ProSiteProfiles AP2/ERF domain profile. 16 62 IPR001471 GO:0003700|GO:0006355
Cca08g01598 70 PANTHER ETHYLENE RESPONSE FACTOR 1 62 - -
Cca08g01598 70 CDD AP2 16 62 IPR001471 GO:0003700|GO:0006355
Cca08g01598 70 Pfam AP2 domain 16 61 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01598 Cca-Chr8 47056764 47059216 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01598 8 62 AP2-EREBP Transcription Factor Family AT1G28370 74.545 2.40e-22 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca08g01598 AP2 1.1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01598 - K09286 gmx:100801981 109.768