Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01596 ATGGAGGAGGCACATAAGGGGGAGCAACACAAAGAGAAAGGAGGAAAAGAAGTGAGGTACCGTGGTGTGAGAAAGAGGCCATGGGGTAAGTATGGTGCAGAAATTAGAGACCCTACAAAACCTACGGGAAGACAATGGTTAGGAACATTTGACACAGCAGAAGAAGCAGCTAGAGCTTATGATCGTGCAGCCATTGAATTGAGGGGTGGTCTTGCAATCCTTAATTTCCCTGAAGTGTACGATTCTCATCTCCCTTTTGTGTTATCAAACCCTTCTGCCACTGCCAATGGAAGTTCTTTTGCTGCACAACGCAAGGAAGTCATTGAGTTCGAGTGTTTGGATAACAAAGTGTTAGAAGATCTTCTTGAGTTAGAAGTGAAGAGAAGGAACTGA 393 0.4453 MEEAHKGEQHKEKGGKEVRYRGVRKRPWGKYGAEIRDPTKPTGRQWLGTFDTAEEAARAYDRAAIELRGGLAILNFPEVYDSHLPFVLSNPSATANGSSFAAQRKEVIEFECLDNKVLEDLLELEVKRRN 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01596 130 PANTHER DNA-BINDING DOMAIN 1 126 IPR044808 GO:0003700|GO:0009873
Cca08g01596 130 CDD AP2 19 79 IPR001471 GO:0003700|GO:0006355
Cca08g01596 130 Pfam AP2 domain 19 69 IPR001471 GO:0003700|GO:0006355
Cca08g01596 130 SMART rav1_2 19 83 IPR001471 GO:0003700|GO:0006355
Cca08g01596 130 SUPERFAMILY DNA-binding domain 19 78 IPR016177 GO:0003677
Cca08g01596 130 MobiDBLite consensus disorder prediction 1 21 - -
Cca08g01596 130 Gene3D AP2/ERF domain 18 79 IPR036955 GO:0003700|GO:0006355
Cca08g01596 130 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Cca08g01596 130 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Cca08g01596 130 ProSiteProfiles AP2/ERF domain profile. 19 77 IPR001471 GO:0003700|GO:0006355
Cca08g01596 130 PANTHER ETHYLENE RESPONSE FACTOR 1 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01596 Cca-Chr8 47000321 47000760 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01596 1 129 AP2-EREBP Transcription Factor Family AT3G23230 50.360 4.06e-37 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca08g01596 AP2 9.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01596 - - gmx:100796977 197.208