Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01595 ATGGAGGAGGCACATATGGGAGAACAAGAAAAAGAGAGAGGAGGTGAAGAAGTGAGGTATCGTGGTGTGAGAAAGAGGCCATGGGGTAAGTACGGTGCAGAAATTAGAGACCCTACAAAACCTACGGGAAGACAATGGTTAGGGACATTTGACACAGCAGAAGAAGCAGCTCGAGCTTATGATCGTGCAGCCATTGGATTGAGGGGTGCTCTTGCAATTCTTAATTTTCCTGATGAGTATTTCTCTCATCTCCCTTTTGTATTATCAAATCCTTCCACTAAGGGCAACGGAAGTTCTTTTGTTGCACCACGGAAGGAAGTTATTGAGTTTGAGTATTTGGATGATAAGGTGTTAGATGATCTTCTTGAGTTAGAAGAGATGAGAAGGAAGGAAACCTAA 399 0.4311 MEEAHMGEQEKERGGEEVRYRGVRKRPWGKYGAEIRDPTKPTGRQWLGTFDTAEEAARAYDRAAIGLRGALAILNFPDEYFSHLPFVLSNPSTKGNGSSFVAPRKEVIEFEYLDDKVLDDLLELEEMRRKET 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01595 132 PANTHER DNA-BINDING DOMAIN 1 127 IPR044808 GO:0003700|GO:0009873
Cca08g01595 132 ProSiteProfiles AP2/ERF domain profile. 19 77 IPR001471 GO:0003700|GO:0006355
Cca08g01595 132 SUPERFAMILY DNA-binding domain 19 79 IPR016177 GO:0003677
Cca08g01595 132 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Cca08g01595 132 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Cca08g01595 132 Pfam AP2 domain 19 69 IPR001471 GO:0003700|GO:0006355
Cca08g01595 132 PANTHER ETHYLENE RESPONSE FACTOR 1 127 - -
Cca08g01595 132 SMART rav1_2 19 83 IPR001471 GO:0003700|GO:0006355
Cca08g01595 132 CDD AP2 19 78 IPR001471 GO:0003700|GO:0006355
Cca08g01595 132 Gene3D AP2/ERF domain 18 78 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01595 Cca-Chr8 46964455 46964853 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01595 16 129 AP2-EREBP Transcription Factor Family AT3G23230 55.645 3.44e-39 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca08g01595 AP2 9.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01595 - - gmx:100796977 180.259