Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01594 ATGGAGGAGGCACATAAAGACAAAGAGAGAGAAGGGGAAGAAGTGAGGTACCGTGGTGTGAGAAAGAGGCCATGGGGTAAGTATGGTGCAGAAATTAGAGACCCTACAAAACCTACGGGAAGACAATGGTTAGGAACATTTGACACAGCAGAAGAAGCAGCTAGAGCTTATGATCGTGCAGCCATTGGTTTGAGGGGTGCTCTTGCAATCCTTAATTTTCCTAATGAGTATTATCCTCATCTCACTTTTCTATCATCAAATTCTTCTACTATGGTAATTGCAACTTCACCACGGAAGGAAGTTATTGAGTTCGAGTGTTTGGATATATAA 330 0.4212 MEEAHKDKEREGEEVRYRGVRKRPWGKYGAEIRDPTKPTGRQWLGTFDTAEEAARAYDRAAIGLRGALAILNFPNEYYPHLTFLSSNSSTMVIATSPRKEVIEFECLDI 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01594 109 SMART rav1_2 16 80 IPR001471 GO:0003700|GO:0006355
Cca08g01594 109 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Cca08g01594 109 Pfam AP2 domain 16 66 IPR001471 GO:0003700|GO:0006355
Cca08g01594 109 CDD AP2 16 75 IPR001471 GO:0003700|GO:0006355
Cca08g01594 109 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Cca08g01594 109 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Cca08g01594 109 PANTHER ETHYLENE RESPONSE FACTOR 1 108 - -
Cca08g01594 109 Gene3D AP2/ERF domain 15 75 IPR036955 GO:0003700|GO:0006355
Cca08g01594 109 ProSiteProfiles AP2/ERF domain profile. 16 74 IPR001471 GO:0003700|GO:0006355
Cca08g01594 109 PANTHER DNA-BINDING DOMAIN 1 108 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01594 Cca-Chr8 46927792 46928121 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01594 11 108 AP2-EREBP Transcription Factor Family AT3G23230 54.054 1.37e-35 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca08g01594 AP2 6.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01594 - - gmx:100796977 158.688