Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01593 ATGGAGGATGCTCGCAaagaagaacaagacaaggagaagggaggagaagaagTGAGGTATCGTGGTGTGAGAAGGAGGCCATGGGGTAAGTATGGTGCAGAGATTAGAGACCCAACAAAACCTACAGGAAGGCAATGGTTAGGAACATTTGACACAGCAGAAGAAGCAGCTAGAGCTTATGATCGTGCAGCAATTGGTTTGAGGGGTGCTCTTGCAATCCTTAATTTTCCCGATGAGTACCATTCTCATCTTCCTTTTTTATCGTCATCGTCGTCTTCTACTAGTGTTGTTGGAAGTTCTTCTGCTACACAGCAGGAAGTTATTGAGTTTGAGTATTTGGATGACAAGGTGTTGGAAGAACTTCTAGAGTTagaagaaaagaggaagaagaaagaaTAG 399 0.3734 MEDARKEEQDKEKGGEEVRYRGVRRRPWGKYGAEIRDPTKPTGRQWLGTFDTAEEAARAYDRAAIGLRGALAILNFPDEYHSHLPFLSSSSSSTSVVGSSSATQQEVIEFEYLDDKVLEELLELEEKRKKKE 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01593 132 Gene3D AP2/ERF domain 18 78 IPR036955 GO:0003700|GO:0006355
Cca08g01593 132 SMART rav1_2 19 82 IPR001471 GO:0003700|GO:0006355
Cca08g01593 132 PANTHER DNA-BINDING DOMAIN 1 127 IPR044808 GO:0003700|GO:0009873
Cca08g01593 132 SUPERFAMILY DNA-binding domain 19 79 IPR016177 GO:0003677
Cca08g01593 132 ProSiteProfiles AP2/ERF domain profile. 19 77 IPR001471 GO:0003700|GO:0006355
Cca08g01593 132 PANTHER ETHYLENE RESPONSE FACTOR 1 127 - -
Cca08g01593 132 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Cca08g01593 132 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Cca08g01593 132 CDD AP2 19 78 IPR001471 GO:0003700|GO:0006355
Cca08g01593 132 Pfam AP2 domain 19 69 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01593 Cca-Chr8 46910478 46910876 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01593 16 129 AP2-EREBP Transcription Factor Family AT3G23230 59.677 3.30e-43 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca08g01593 AP2 3.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01593 - - gmx:100807295 165.236