Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01592 ATGGCGGGAACAAGCTCAACATCTTTCCAACGACTATTTCAGAAGGCAGCTTCGGCTCTGTCTAGGACGCCTCCCCCTCATTTAGTTTCCACTCAAGAAGAAAGGCAGAGGTACCTGAGCCAGTGTGTTCCCCTCCACAAAGCAGCACTGAAGGGTGACTGGAAAGAAGCAAAGAAAATACTAGATCAAGACACCACGCTTCTCAACTCTGCCATAACAAAGGGTTGGGCAACAGTGCTCCATGTTGCAGTGGGAGCAAACCATGAACACTTTGTGGAGGAACTCGTCAAACTCATGCCACCCCAAGATTTAGAGCTGCAAGATGACAAAGGGAACACTGCTTTCTGCTTTGCTGCAGCAGTTGGTAACGTCCACATTGCTGAGATAATGCGCAGAAAAAATCAACTGTTGCCAACGTTAAGGAGTGGAGTAGGTGTCACTCCTCTTCACTTGGCTGTGTTACAAGGAAGAAGTGAAATGACATGCTATCTGTTTGATGAGTCTAAGGAAATTCTCTATGAAGAGGATTGGATTACACTGTTCTTCATTTGTATAAACACTGGACTCTATGATCTGGCCCTGAAAATGCTAAATCAGAAGGAATCGCTGGCTTTTGCTCGAGGTGATGATAGTGAGACTGGTTTGCATGTCTTGGCCAGAAAGCCTTCTTCAGTTTGTAGTTGCGGAAGTCAACTGCGATATCCAAGACACCTCCTGCATTTCTGTAAGGGCTTAATTTTAATCGCTTCTAAGGACCCTCCAGTTCTGAAACTTACAAAACGCATGTGGGAGATATTTCTTACCTTGGATGATTCAGAGTTTATGTATGCCGTAAAAGAGCCTACACAAGTAACATTCCTTGCAGCAGAAGTTGGAAATTTCGAGTTTCTATCTGTGGTGATGAGCACTTATCCTGATTTGATTTGGGAATTAAACACCTTAGGTCAAAGTATAATTCATGTTGCTGCTTTGCACCGTCATTCTAGCATCTTCAATTTGATACACGAAATAGGACCAACCAAAGATTTCGTATTAACATATATGGATGATGAAGGCAACACTTTACTCCACTGTGTTGCAAAATTAGCACCACAAGAACGACTTAATATATTTTCTGGAGCAGCTCTTCAAATGATGCTTGAGTTGTCATGGTTTGAGGAGGTAAAAAAGATAATGCTACCATCATTTATAGAGCTGGCAAACCATGAAAACATTACTCCACGACAACTATTCATCAAGGATCACCAAGAGTTGCTAAAAAAGGGAGAGTCATGGATGAAAAGAACAGCAAACTCTTGCATGGTTGTTGCAACCCTAATTGCAACAGGAGTGCTTTCTGCTGCCTTCAGCCTCGGTGCTAACAACGACAACTTAGCATTTCCCAATTATTTGACGATGAAACCCTGGTTCATGGTATTTGCATTATCAGATGCATTGGCATTGGTCTCTTCCTCAACCTCAATCCTAATCTTCTTGTCCCTCCTCATTTCACGATATGCTGAGGAAGACTTTATAAATGCTTTCTTCATGGCGTATTACCATGTATCCTCTCTGCTAGATCTGAAATCTCCAGCTTTTCTCATGAGATATACGAAGCAAATTATACGCCAATATGTAAGAACTGTTCAGAGTGAGTTCTCTGCTTCACGTCAAAGGACTTTAGATAGAGCTTATGATGATCTCAGATATGTAAGTTCCAACCTTGGAGTGAACGATGATAATATGGCCAACCAAGCATTAGCTTTCTATAGAATAGCACTTGAAAGGAGTTTCACCAGGGGACGAAGATCAGAGCATGTACAGGCTGCTTGTCTATATATTGCATTCCGCATGGTTATCTTGAGGACAATAATCTGGCTATCATATCCATTGTGGGCATTACTGATGCCACCCTATTTTGTTGTGGTTGGCAAAGATTTGTTAAAGCAAAGGAATGTGTTTGTCTCTGAAACTGCACTTAGTATTATTGCCAGCATGAAACGTGACTGGATGCAGACAGGGAGGAAAACTAGTGGGTTATGGGGTGGCGCAATTTACATGGCTGCGCTTGCACATGGGGTCAAGTGCACTAAGTCAGATATTTTTGATAAACTATCTGGTGGACTTGGTGGTGGTTTGGATCCTCCTGCATTCCAACGTGCGGAGAAGGAGAGAATGATAAAATCACATTCCAAGGAAAATTCTAATCAATCACACAATTTGGTGGAAGAGTCAAACAATGAATGCAGGAGCCAAATAGAAGAATTACATACCTCAGTGGCAGAAAGTATTGTGATTAATGAAAATGTGGCCACTAAAGATGGTGAGCATGATGAGTCACATAAAGAAGATGATCTGAACACAGAAACTCAAAATGAATCAGAAAGTCTTTCTGATATTGATGATCATGAGCATGTTCTCCCTTCAGAGTTTATGTATGCCGTAAAAGAGCCTACACAAGTAACATTCCTTGCAGCAGAAGTTGGAAATTTCGAGTTTCTATCTGTGGTGATGAGCACTTATCCTGATTTGATTTGGGAATTAAACACCTTAGGTCAAAGTATAATTCATGTTGCTGCTTTGCACCGTCATTCTAGCATCTTCAATTTGATACACGAAATAGGACCAACCAAAGATTTCGTATTAACATATATGGATGATGAAGGCAACACTTTACTCCACTGTGTTGCAAAATTAGCACCACAAGAACGACTTAATATATTTTCTGGAGCAGCTCTTCAAATGATGCTTGAGTTGTCATGGTTTGAGGAGGTAAAAAAGATAATGCTACCATCATTTATAGAGCTGGCAAACCATGAAGGCATTACTCCACGAGAACTATTCATCAAGGATCACCAAGAGTTGCTAAAAAAGGGAGAGTCATGGATGAAAAGAACAGCAAACTCTTGCATGGTTGTTGCAACCCTAATTGCAACAGGAGTGCTTTCTGCTGCCTTCAGCCTCGGTGCTAACAACGACAACTTAGCATTTCCCAATTATTTGACGATGAAACCCTGGTTCATGCATGATGGTGTCATTTAG 3021 0.4134 MAGTSSTSFQRLFQKAASALSRTPPPHLVSTQEERQRYLSQCVPLHKAALKGDWKEAKKILDQDTTLLNSAITKGWATVLHVAVGANHEHFVEELVKLMPPQDLELQDDKGNTAFCFAAAVGNVHIAEIMRRKNQLLPTLRSGVGVTPLHLAVLQGRSEMTCYLFDESKEILYEEDWITLFFICINTGLYDLALKMLNQKESLAFARGDDSETGLHVLARKPSSVCSCGSQLRYPRHLLHFCKGLILIASKDPPVLKLTKRMWEIFLTLDDSEFMYAVKEPTQVTFLAAEVGNFEFLSVVMSTYPDLIWELNTLGQSIIHVAALHRHSSIFNLIHEIGPTKDFVLTYMDDEGNTLLHCVAKLAPQERLNIFSGAALQMMLELSWFEEVKKIMLPSFIELANHENITPRQLFIKDHQELLKKGESWMKRTANSCMVVATLIATGVLSAAFSLGANNDNLAFPNYLTMKPWFMVFALSDALALVSSSTSILIFLSLLISRYAEEDFINAFFMAYYHVSSLLDLKSPAFLMRYTKQIIRQYVRTVQSEFSASRQRTLDRAYDDLRYVSSNLGVNDDNMANQALAFYRIALERSFTRGRRSEHVQAACLYIAFRMVILRTIIWLSYPLWALLMPPYFVVVGKDLLKQRNVFVSETALSIIASMKRDWMQTGRKTSGLWGGAIYMAALAHGVKCTKSDIFDKLSGGLGGGLDPPAFQRAEKERMIKSHSKENSNQSHNLVEESNNECRSQIEELHTSVAESIVINENVATKDGEHDESHKEDDLNTETQNESESLSDIDDHEHVLPSEFMYAVKEPTQVTFLAAEVGNFEFLSVVMSTYPDLIWELNTLGQSIIHVAALHRHSSIFNLIHEIGPTKDFVLTYMDDEGNTLLHCVAKLAPQERLNIFSGAALQMMLELSWFEEVKKIMLPSFIELANHEGITPRELFIKDHQELLKKGESWMKRTANSCMVVATLIATGVLSAAFSLGANNDNLAFPNYLTMKPWFMHDGVI 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01592 1006 Gene3D - 27 372 IPR036770 -
Cca08g01592 1006 SUPERFAMILY Cyclin-like 648 697 IPR036915 -
Cca08g01592 1006 SUPERFAMILY Ankyrin repeat 816 892 IPR036770 -
Cca08g01592 1006 Gene3D - 638 700 - -
Cca08g01592 1006 Gene3D - 710 951 IPR036770 -
Cca08g01592 1006 Pfam Transcription factor TFIIB repeat 551 611 IPR013150 GO:0017025
Cca08g01592 1006 Pfam Transcription factor TFIIB repeat 648 696 IPR013150 GO:0017025
Cca08g01592 1006 MobiDBLite consensus disorder prediction 764 792 - -
Cca08g01592 1006 SUPERFAMILY Ankyrin repeat 41 364 IPR036770 -
Cca08g01592 1006 Pfam Domain of unknown function 424 502 IPR026961 -
Cca08g01592 1006 SUPERFAMILY Cyclin-like 557 611 IPR036915 -
Cca08g01592 1006 Gene3D - 532 618 - -
Cca08g01592 1006 PANTHER ANKYRIN REPEAT PLANT-LIKE PROTEIN 3 511 - -
Cca08g01592 1006 PANTHER ANKYRIN REPEAT PLANT-LIKE PROTEIN 803 995 - -
Cca08g01592 1006 Pfam Ankyrin repeats (3 copies) 80 167 IPR002110 GO:0005515
Cca08g01592 1006 PANTHER CASKIN 3 511 - -
Cca08g01592 1006 MobiDBLite consensus disorder prediction 764 782 - -
Cca08g01592 1006 ProSiteProfiles Ankyrin repeat profile. 144 176 IPR002110 GO:0005515
Cca08g01592 1006 PANTHER CASKIN 803 995 - -
Cca08g01592 1006 SMART ANK_2a 75 106 IPR002110 GO:0005515
Cca08g01592 1006 SMART ANK_2a 176 205 IPR002110 GO:0005515
Cca08g01592 1006 SMART ANK_2a 314 343 IPR002110 GO:0005515
Cca08g01592 1006 SMART ANK_2a 144 173 IPR002110 GO:0005515
Cca08g01592 1006 SMART ANK_2a 844 873 IPR002110 GO:0005515
Cca08g01592 1006 SMART ANK_2a 110 140 IPR002110 GO:0005515
Cca08g01592 1006 SMART ANK_2a 40 69 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01592 Cca-Chr8 46860900 46880358 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01592 693 734 Inorganic Solute Cotransporters AT2G01280 57.143 1.63e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01592 - - ccaj:109791778 966.452