Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01584 ATGACCGATGTAGCATTGAGTTCTCATATCGAAAACCATCTCAAGAACCTATCTAGAAACACATTGGATCATCTTCGTTCTACTTCTCTAGCCAAATTCTTGATTCCTTCCCAAGCATTGAATTCTTCTGAACGTTCCGTCTCAAACCCTCGAAACCCTCCCACAAACACGATATCATTCTCCTCCTCTTTGGAAACACAATCAATTTATTCCAAATTAAGGCCCTCTTTGACTGTGACGACGACGAAACCTAACGATTGCAAGAGGTTCTCCAAGGGGGAAGTGATGATTAGAAAGGTTAGAGAAGAATTAGAGGGGGAAGGCCAATCGAAAGATTCTGGAAAATCTGGTGGATTGATATATTATAAGGATTATGGGTCTGCTGGACGAATGGATACCAATGACAGCTTGCGTGTGGCAAGTTTATGGCATTCAATGCATGCTATCTCTCACCAGTTATCACCTGTTTCAGGTAAAATATGTAGCTGCTGGGAATTTTTTTTGCTATATCTTGATGTAAATGTTGCAGAAAATGGTTCTGTTTTTATATTCGGTGAAAGAGGGATTGACAAATTGAAGCTCACACAATTAGGTGTGGAGAGGCTTATTTTTCGTGTTGTTCCTAGTGTGCTAGAAACATGGACGGACTCTTTTAGCTTCGCAAAGATGACTAATTTTGAGAGATCTCAATTTCTGGACTATACTTTCCTAGATTTTCAGGGGACTTCTGCTGATCTTAAACCAGTTAATCAAGGATCCTTAACAATTCATGGTCTGCACTTGAATGTGCTATTTTTGAGGAAGATGAGCTTTTTCACTGATAAAAAGGAAATTCAGAGGTCTGCTACAGCTCTGAGGTATGTTGCACATGGTCATCTTCTTGTTCCTTGTAAATTGGGCAAAAGTAGTCGTGATAAGGCATCAAGGTCAGTGACCAACTTGTTTGTTGGTCAGCTAAATCACTTCAAGCTGTTGTCATCGTGGGAGTACCTACAAACAACTTGCAATAGGTTGCTTCATTTCCTCGATCAATCAACATATGAGCTTGGTATGTCATAA 1059 0.3994 MTDVALSSHIENHLKNLSRNTLDHLRSTSLAKFLIPSQALNSSERSVSNPRNPPTNTISFSSSLETQSIYSKLRPSLTVTTTKPNDCKRFSKGEVMIRKVREELEGEGQSKDSGKSGGLIYYKDYGSAGRMDTNDSLRVASLWHSMHAISHQLSPVSGKICSCWEFFLLYLDVNVAENGSVFIFGERGIDKLKLTQLGVERLIFRVVPSVLETWTDSFSFAKMTNFERSQFLDYTFLDFQGTSADLKPVNQGSLTIHGLHLNVLFLRKMSFFTDKKEIQRSATALRYVAHGHLLVPCKLGKSSRDKASRSVTNLFVGQLNHFKLLSSWEYLQTTCNRLLHFLDQSTYELGMS 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01584 352 PANTHER TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT-RELATED 115 163 - -
Cca08g01584 352 PANTHER TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 115 163 IPR007233 GO:0016192|GO:0030008
Cca08g01584 352 MobiDBLite consensus disorder prediction 41 60 - -
Cca08g01584 352 Pfam Sybindin-like family 115 157 IPR007233 GO:0016192|GO:0030008
Cca08g01584 352 Gene3D - 113 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01584 Cca-Chr8 46302340 46307081 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01584 193 242 PHD Transcription Factor Family AT5G63900 38.000 4.42e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01584 K20303 - ccaj:109793720 201.06