Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca08g01566 | ATGAAGTATATTCGGAGCAACAGCTTGAAGAGGCTCTTCTCGTTCGGAAAACGAGGGTTTGGGGAAGAAAGTGATGTGGAGTTGGTGGTTCCTCCTTGTGAAGAGCACCCTCCAAGACCCTCTTGGAAATGCTTCTCTTATGAAGAGTTGTTTCATGCCACCAATGGCTTTACTTCAGAGAATGTGGTTGGGAGAGGAGGGTATGCAGAGGTTTACAAGGGAACGTTGGATGGTGGTGAGGAAATTGCGGTGAAGAGGCTTACGAGAATTTCAAGGGATGAGAGGAAGGAGAAAGAGTTTCTGATAGAGATTGGAACAATTGGCCACGTGCGCCATTCCAACGTGTTGCCTCTTCTGGGGTGTTGTATTGACAATGGACTTTACCTCGTTTTCGAGCTATCCACCGTTGGTTCTGTTGCTTCTCTTATTCATGATGAGAAGTTGCCTCCCTTGGATTGGAAAACAAGGTATAAGATAGCTCTTGGGACTGCACGTGGCCTTCACTACTTGCACAAAGGCTGCAAGAGGAGGATAATTCATAGGGACATCAAGTCCTCAAACATTTTGTTGACAGAAGATTTTGAACCCAAGATATCTGATTTTGGACTAGCAAGGTGGCTTCCATCTCAATGGACTCATCATTCAATAGCCCCAATAGAAGGGACATTTGGGCATTTGGCACCTGAGTACTACATGCATGGAGTTGTGGATGAGAAGACAGATGTATTTGCCTTTGGTGTGTTTTTGCTTGAAGTCATCTCTGGGAGGAAGCCAGTGGATGGATCTCACCAAAGCTTGCACAGCTGGGCTAAACCAATACTACACAAAGGGGAGATAGAAAAAGTGGTAGATCCAAGGCTTGGAGGGGCTTATGATGTGACACAGTTTAATAGACTTGCCTTTGCTGCCTCCTTGTGTATAAGGGCATCTTCAACTTGGCGACCTACCATGAGTGAGGTACTTGAGGCAATGGAGGGGCAAGACATGAACAAAGAGAAGTGGGAAATGCCAGAGGAAGAAGAGCAAGAGGAGGAATTCTGTGGCTTTGAGGATCTGGAATATGCATATGACAGTTCCTTTTCAATGTCTTTACCTGACTCTGTTAGTAGCACTTAG | 1116 | 0.4561 | MKYIRSNSLKRLFSFGKRGFGEESDVELVVPPCEEHPPRPSWKCFSYEELFHATNGFTSENVVGRGGYAEVYKGTLDGGEEIAVKRLTRISRDERKEKEFLIEIGTIGHVRHSNVLPLLGCCIDNGLYLVFELSTVGSVASLIHDEKLPPLDWKTRYKIALGTARGLHYLHKGCKRRIIHRDIKSSNILLTEDFEPKISDFGLARWLPSQWTHHSIAPIEGTFGHLAPEYYMHGVVDEKTDVFAFGVFLLEVISGRKPVDGSHQSLHSWAKPILHKGEIEKVVDPRLGGAYDVTQFNRLAFAASLCIRASSTWRPTMSEVLEAMEGQDMNKEKWEMPEEEEQEEEFCGFEDLEYAYDSSFSMSLPDSVSST | 371 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca08g01566 | 371 | SMART | serkin_6 | 57 | 324 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cca08g01566 | 371 | ProSiteProfiles | Protein kinase domain profile. | 57 | 335 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cca08g01566 | 371 | Pfam | Protein tyrosine and serine/threonine kinase | 60 | 265 | IPR001245 | GO:0004672|GO:0006468 | |
Cca08g01566 | 371 | PANTHER | OS04G0654600 PROTEIN | 29 | 352 | - | - | |
Cca08g01566 | 371 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 178 | 190 | IPR008271 | GO:0004672|GO:0006468 | |
Cca08g01566 | 371 | ProSitePatterns | Protein kinases ATP-binding region signature. | 63 | 85 | IPR017441 | GO:0005524 | |
Cca08g01566 | 371 | Gene3D | Phosphorylase Kinase; domain 1 | 33 | 133 | - | - | |
Cca08g01566 | 371 | Gene3D | Transferase(Phosphotransferase) domain 1 | 135 | 351 | - | - | |
Cca08g01566 | 371 | SUPERFAMILY | Protein kinase-like (PK-like) | 35 | 327 | IPR011009 | - | |
Cca08g01566 | 371 | PANTHER | OS08G0249100 PROTEIN | 29 | 352 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca08g01566 | Cca-Chr8 | 45991549 | 45995408 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca08g01566 | 34 | 345 | Receptor kinase-like Gene Family | AT1G60800 | 41.796 | 1.19e-71 | 232 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_RLCK-VI | Cca08g01566 | PK_Tyr_Ser-Thr | 5e-40 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca08g01566 | - | - | gmx:100804983 | 666.766 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca08g01566 | 08 | 45991549 | 45995408 | Cca08g01566 | 08 | 45991549 | 45995408 | ECH | |
Cca11g02404 | 11 | 50865411 | 50870545 | Cca08g01566 | 08 | 45991549 | 45995408 | PCT |