Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01566 ATGAAGTATATTCGGAGCAACAGCTTGAAGAGGCTCTTCTCGTTCGGAAAACGAGGGTTTGGGGAAGAAAGTGATGTGGAGTTGGTGGTTCCTCCTTGTGAAGAGCACCCTCCAAGACCCTCTTGGAAATGCTTCTCTTATGAAGAGTTGTTTCATGCCACCAATGGCTTTACTTCAGAGAATGTGGTTGGGAGAGGAGGGTATGCAGAGGTTTACAAGGGAACGTTGGATGGTGGTGAGGAAATTGCGGTGAAGAGGCTTACGAGAATTTCAAGGGATGAGAGGAAGGAGAAAGAGTTTCTGATAGAGATTGGAACAATTGGCCACGTGCGCCATTCCAACGTGTTGCCTCTTCTGGGGTGTTGTATTGACAATGGACTTTACCTCGTTTTCGAGCTATCCACCGTTGGTTCTGTTGCTTCTCTTATTCATGATGAGAAGTTGCCTCCCTTGGATTGGAAAACAAGGTATAAGATAGCTCTTGGGACTGCACGTGGCCTTCACTACTTGCACAAAGGCTGCAAGAGGAGGATAATTCATAGGGACATCAAGTCCTCAAACATTTTGTTGACAGAAGATTTTGAACCCAAGATATCTGATTTTGGACTAGCAAGGTGGCTTCCATCTCAATGGACTCATCATTCAATAGCCCCAATAGAAGGGACATTTGGGCATTTGGCACCTGAGTACTACATGCATGGAGTTGTGGATGAGAAGACAGATGTATTTGCCTTTGGTGTGTTTTTGCTTGAAGTCATCTCTGGGAGGAAGCCAGTGGATGGATCTCACCAAAGCTTGCACAGCTGGGCTAAACCAATACTACACAAAGGGGAGATAGAAAAAGTGGTAGATCCAAGGCTTGGAGGGGCTTATGATGTGACACAGTTTAATAGACTTGCCTTTGCTGCCTCCTTGTGTATAAGGGCATCTTCAACTTGGCGACCTACCATGAGTGAGGTACTTGAGGCAATGGAGGGGCAAGACATGAACAAAGAGAAGTGGGAAATGCCAGAGGAAGAAGAGCAAGAGGAGGAATTCTGTGGCTTTGAGGATCTGGAATATGCATATGACAGTTCCTTTTCAATGTCTTTACCTGACTCTGTTAGTAGCACTTAG 1116 0.4561 MKYIRSNSLKRLFSFGKRGFGEESDVELVVPPCEEHPPRPSWKCFSYEELFHATNGFTSENVVGRGGYAEVYKGTLDGGEEIAVKRLTRISRDERKEKEFLIEIGTIGHVRHSNVLPLLGCCIDNGLYLVFELSTVGSVASLIHDEKLPPLDWKTRYKIALGTARGLHYLHKGCKRRIIHRDIKSSNILLTEDFEPKISDFGLARWLPSQWTHHSIAPIEGTFGHLAPEYYMHGVVDEKTDVFAFGVFLLEVISGRKPVDGSHQSLHSWAKPILHKGEIEKVVDPRLGGAYDVTQFNRLAFAASLCIRASSTWRPTMSEVLEAMEGQDMNKEKWEMPEEEEQEEEFCGFEDLEYAYDSSFSMSLPDSVSST 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01566 371 SMART serkin_6 57 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01566 371 ProSiteProfiles Protein kinase domain profile. 57 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01566 371 Pfam Protein tyrosine and serine/threonine kinase 60 265 IPR001245 GO:0004672|GO:0006468
Cca08g01566 371 PANTHER OS04G0654600 PROTEIN 29 352 - -
Cca08g01566 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Cca08g01566 371 ProSitePatterns Protein kinases ATP-binding region signature. 63 85 IPR017441 GO:0005524
Cca08g01566 371 Gene3D Phosphorylase Kinase; domain 1 33 133 - -
Cca08g01566 371 Gene3D Transferase(Phosphotransferase) domain 1 135 351 - -
Cca08g01566 371 SUPERFAMILY Protein kinase-like (PK-like) 35 327 IPR011009 -
Cca08g01566 371 PANTHER OS08G0249100 PROTEIN 29 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01566 Cca-Chr8 45991549 45995408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01566 34 345 Receptor kinase-like Gene Family AT1G60800 41.796 1.19e-71 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Cca08g01566 PK_Tyr_Ser-Thr 5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01566 - - gmx:100804983 666.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01566 08 45991549 45995408 Cca08g01566 08 45991549 45995408 ECH
Cca11g02404 11 50865411 50870545 Cca08g01566 08 45991549 45995408 PCT