Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01565 ATGTTTGAAAATATGAAGAGAAGTAGCTTTGAAGTGTTGGGAATGTGCTGTGCTACAGAAGCAGCTCTGGTTGAAAGAATTGTGAAGCCTCTTCATGGAGTCAAAGATGTTTCAGTGATAGTACCTACCCGAACAGTTACCGTGGTCCATGATGTTCTCTTGATTTCTGAGTCACAAATAGCTGATGCACTGAATGCTGCAAGGCTTGAAGCAAGTTTGAGACTACAAGGAGAGACTGATAGTGAAAAGAAATTGCCAGATTTAACTACAATAGTGTGTGGCCTTTTACTGGCAGTTTCTTTCTTGAAATATGTATATCCCCCTTTGGGATGGTTGGCTCTTGGTTCTGTTGTCATTGGCTTCCCTAAGGTTCTATTCAGGGCCATAGCTTCCATTAAGGCTCTTACTCTTAATATCAACATTCTGGTTCTATTGGCAGTGTGTGGTACTGCTGCTTTACAAGATTTTTGGGAGGCTGGAGTCATCATCTTCCTGTTCTCCATTGCTCAATGGCTTGAGACAAGAGCAACTCACAAGGCAATGGTTGCAATGTCATCTTTAACAAGCATGGCTCCTCGAAAGGCCGTTATTGCTGAAACTGGGGAACGTGTTGACGTCAACGACGTTAAAATCAATAGCATACTTGCAGTCAAGGCTGGTGATGCTATTCCTCTTGATGGAATCGTGGTAGAAGGAAAGTGTGAAGTTGATGAAAAGATGTTAACAGGAGAATCATTACCCGTTATCAAAGAGTTAGATTCAGTTGTGTGGGCTGGAACTATTAATGTGAATGGATATATAAGTGTAAAAACTACTGTTTCGGCAAAAGACACAGTGGTGGCTAGAATGTCAAAACTTGTTGAAGAGGCTTCAAGTAGAAAATCTAGGACACAAAGATTCATAGATAATTTTGCAAAGTACTATATTCCTGCTGTTGTCTTGATTTCTGCTAGCATTGCAATGATTCCAGCTGCATTAGAAGTTCCTGACATTACGCCTTGGCTTCATCTGGCAATTGTGGTTTTATTAAGTGCATGCCCTTGTGCTCTCATCCTCTCCACACCTGTTGCAATCTTTTGTGCTCTCACAAAATCTGCAATAAGTGGTTTACTATTGAAAGGTGGAGATTATATTGAAACACTTTCTGGAATTAAAACAGTGGCTTTCGATAAAACTGGCACCATAACAAGAGGAGAGTTCACTGTGACAGATTTTTCTGTTGCTGTAGATGACATTAGCATTGAATCTTTATTGTACTGGGTTTCAAGTATTGAGAGTAAATCAAGTCATCCTATGGCAGCTGCACTAGTGGAATGTGGAATGTCACATTCTATCAAACCAATCCCTGAAAATGTGGAGAATTTTCAAAATTTTCCAGGAGAAGGAGTTTTTGGTACAATTGATGGAAAGGATATCTATATAGGCAATAAAAGAATTGGTGCAAGAGCTGGCTGTGAAAGAGTTGATAGTCACATCCAATTTCAAAGCCATGGAAATTCTACCCCGAAACAATGCTGTGGACCAACTCTGGTTGGAGTCTTCAGCTTAGCTGATGCTTGCAGATCAGGGGCTTTGGAGGCAATAGAAGAGCTAAAGTTGTTAGGTGTGAGAACAGTCATGCTAACAGGAGATAGCACTCAGGCTGCTATGTATGTTCAGAGTCAGTTGAACCATGCCCTTGACATTGTCCATGCAGAGCTTCTACCTGCAGATAAGGCAGTGATCATTGAGAATTTCAAGAAAGATGGGCTAACAGCCATGATTGGAGATGGCATGAATGATGCTCCTGCACTAGCCACAGCTGATATTGGCATTTCAATGGGAATATCTGGTTCAGCTCTTGCGAATGAGACAGGCAATGCAATTCTCATGTCGAATGACATCCGAAAAGTACCTGAAGCCATTCGGCTAGCGAGAAAAACTACTAGAAAACTCATTGAGAATGTCATTATTTCAGTTGGCTTCAAGAGTGCAATACTTGCACTGGCAATTGCAGGATACCCTATAGTTTGGCTTGCTGTGTTGACTGATGTTGGAACCTGTTTACTTGTGATTCTGAATAGCATGTTACTATTACAAGAGAAGCCCAAATATGAAAGAGAATCTACAAGTTCTAAATACCGAAGTTTCTTTGGAGATATGACTATAACCCTACTTGACAAGCAAAGTAATAGCAATGAGAGAAAACCGCTTCTTAGTGCTGAAAAGTGTGGTAAAGATTGTTGTGAAAACAACGCTTACAGTGTGGCAACTACAAGCAAGGATGAATCTTCTGGACTTTCGAAGATGAGCTCACTCAAGGGAAACCACAACAATGGAAACTTGGTCTCTATTGAAGTTCATATAGTGAAACCTTGTAATGGTTTCTGTCTAGGCAAAGTTAAAATGTGTGAGGACTCCTCATGCAGAACAAATAATGCCTCTGATTGTTGCCAATTGAAATTTAAGACTGAAAAATGTGACACAGGTTCTGATGTTACACAAGATGCCAGCATTGCCACCTTGGAGTCTGATTATAAGGAAAAGTCTATGGATATTTCAGAGTTTTATGGGACAAGTGGGATCACCAAGTGCTGCAAGAACTCATGTTGCAATGGTAGTGTTAACGATATTATAAGTAGCCTTAGCCAGCCAGAAATTATCATCGAGTGA 2652 0.4054 MFENMKRSSFEVLGMCCATEAALVERIVKPLHGVKDVSVIVPTRTVTVVHDVLLISESQIADALNAARLEASLRLQGETDSEKKLPDLTTIVCGLLLAVSFLKYVYPPLGWLALGSVVIGFPKVLFRAIASIKALTLNINILVLLAVCGTAALQDFWEAGVIIFLFSIAQWLETRATHKAMVAMSSLTSMAPRKAVIAETGERVDVNDVKINSILAVKAGDAIPLDGIVVEGKCEVDEKMLTGESLPVIKELDSVVWAGTINVNGYISVKTTVSAKDTVVARMSKLVEEASSRKSRTQRFIDNFAKYYIPAVVLISASIAMIPAALEVPDITPWLHLAIVVLLSACPCALILSTPVAIFCALTKSAISGLLLKGGDYIETLSGIKTVAFDKTGTITRGEFTVTDFSVAVDDISIESLLYWVSSIESKSSHPMAAALVECGMSHSIKPIPENVENFQNFPGEGVFGTIDGKDIYIGNKRIGARAGCERVDSHIQFQSHGNSTPKQCCGPTLVGVFSLADACRSGALEAIEELKLLGVRTVMLTGDSTQAAMYVQSQLNHALDIVHAELLPADKAVIIENFKKDGLTAMIGDGMNDAPALATADIGISMGISGSALANETGNAILMSNDIRKVPEAIRLARKTTRKLIENVIISVGFKSAILALAIAGYPIVWLAVLTDVGTCLLVILNSMLLLQEKPKYERESTSSKYRSFFGDMTITLLDKQSNSNERKPLLSAEKCGKDCCENNAYSVATTSKDESSGLSKMSSLKGNHNNGNLVSIEVHIVKPCNGFCLGKVKMCEDSSCRTNNASDCCQLKFKTEKCDTGSDVTQDASIATLESDYKEKSMDISEFYGTSGITKCCKNSCCNGSVNDIISSLSQPEIIIE 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01565 883 Gene3D - 177 291 - -
Cca08g01565 883 CDD P-type_ATPase_HM 90 690 - -
Cca08g01565 883 Pfam E1-E2 ATPase 198 365 - -
Cca08g01565 883 SUPERFAMILY HMA, heavy metal-associated domain 2 73 IPR036163 GO:0046872
Cca08g01565 883 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 139 691 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cca08g01565 883 SUPERFAMILY HAD-like 386 689 IPR036412 -
Cca08g01565 883 ProSitePatterns E1-E2 ATPases phosphorylation site. 390 396 IPR018303 -
Cca08g01565 883 Gene3D - 399 520 IPR023299 GO:0000166
Cca08g01565 883 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 5 823 - -
Cca08g01565 883 SUPERFAMILY Calcium ATPase, transmembrane domain M 139 382 IPR023298 -
Cca08g01565 883 ProSiteProfiles Heavy-metal-associated domain profile. 7 73 IPR006121 GO:0046872
Cca08g01565 883 ProSitePatterns Hypothetical cof family signature 2. 588 610 - -
Cca08g01565 883 PRINTS P-type cation-transporting ATPase superfamily signature 237 251 - -
Cca08g01565 883 PRINTS P-type cation-transporting ATPase superfamily signature 388 402 - -
Cca08g01565 883 PRINTS P-type cation-transporting ATPase superfamily signature 512 523 - -
Cca08g01565 883 PRINTS P-type cation-transporting ATPase superfamily signature 534 544 - -
Cca08g01565 883 PRINTS P-type cation-transporting ATPase superfamily signature 588 607 - -
Cca08g01565 883 PRINTS P-type cation-transporting ATPase superfamily signature 612 624 - -
Cca08g01565 883 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 161 669 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca08g01565 883 SFLD p-type atpase 371 641 IPR044492 -
Cca08g01565 883 Pfam Heavy-metal-associated domain 10 63 IPR006121 GO:0046872
Cca08g01565 883 TIGRFAM ATPase-IB2_Cd: cadmium-translocating P-type ATPase 139 692 - -
Cca08g01565 883 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA4-RELATED 5 823 - -
Cca08g01565 883 Gene3D - 2 75 - -
Cca08g01565 883 SUPERFAMILY Calcium ATPase, transduction domain A 202 287 IPR008250 -
Cca08g01565 883 SFLD Haloacid Dehalogenase 371 641 - -
Cca08g01565 883 Pfam haloacid dehalogenase-like hydrolase 384 602 - -
Cca08g01565 883 PRINTS Cadmium-transporting ATPase signature 10 19 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cca08g01565 883 PRINTS Cadmium-transporting ATPase signature 21 42 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cca08g01565 883 PRINTS Cadmium-transporting ATPase signature 174 194 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cca08g01565 883 PRINTS Cadmium-transporting ATPase signature 253 269 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cca08g01565 883 PRINTS Cadmium-transporting ATPase signature 272 286 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cca08g01565 883 Gene3D - 379 639 IPR023214 -
Cca08g01565 883 CDD HMA 10 72 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01565 Cca-Chr8 45974526 45984792 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01565 3 757 Primary Pumps ATPases AT4G30110 57.254 0.0 875
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01565 K01534 - gmx:100815324 1490.71