Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01561 ATGTCTCCCTTAGTCATGCTGATCTTGGGTTTCCTTTTTGTTATATTCTGTATTTTGATATGGCTACGGCCCAAATGCCCCACGGGAATATTTACTCCAGACTCACAATTCATGACACTGACTATGGACAAATTTCTGAACGATATGGAGAAGGAGAAGCCAATCAGGTTTACCAATCAGCATCTAATGATTGCCACTGATAACTACTCTTACTTgttggggtcaggaggttttggagcagtctacaagggaatttttagtgatggaacaattgtagctgtgaaggttctacatggaacttcagacaagaaaattgaggagcagttcatggcagaagtgggtacaattggcaaaactcatcacttcaatcttgttcggctctatggattttgctttgaaagaaacatgagatcactggtttatgagtacatggggaatggctctcttgataagtacctgtttcatgaaaaggggagcataggatttgagaggcttcatgagattgcagttgggacagccaaaggcattgcttacttgcatgaagagtgccaacagaaaataatccactatgacataaaaccaggaaacattctcttggacagggattttaatcctaaagttgctgattttggcttagccaagctttgtaatagggaaaatactcatataaccctgactaggggtaggggcactcctggttatgctgcacctgagctttggatgcctaattttcctgtaactcacaagtgtgatgtttacagctttggcatgctgttatttgaaatcctaggcaggagaagaaacCTTGACATTAACCTTTCCGATGAGAGCCAAGAGTGGTTTCCAATATGGGTTTGGAAAAGGTTTGATAAAGAACAAGTGGATGAATTAGTAGTAGCATGTGGGATAGAGGATCAACATAGGGATGTTGCAGAAAGAATGATTAAGGTAGCTTTGTCATGTGTTCAGTATAGGCAAGAATCGAGACCTGTAATGAGTGCTGTGGTGAAAATGTTGGAAGGTTCAGTTGAAATTCCAAAACCTCTGAACCCATTTCAGCATATGATTTTCCCAGATCATCATCCACTCCCAGCATCACAAACCAACATTGATACAAGTATGGGTTCAGGCTCCTCAGTCATAGTGACTGATCATGAAGATTCTAGCTTTGCACTTGCTCCTGTTGTCACCAAGCTCGAAATTGAATCAGCCTCAACGTAA 1221 0.2113 MSPLVMLILGFLFVIFCILIWLRPKCPTGIFTPDSQFMTLTMDKFLNDMEKEKPIRFTNQHLMIATDNYSYLLGSGGFGAVYKGIFSDGTIVAVKVLHGTSDKKIEEQFMAEVGTIGKTHHFNLVRLYGFCFERNMRSLVYEYMGNGSLDKYLFHEKGSIGFERLHEIAVGTAKGIAYLHEECQQKIIHYDIKPGNILLDRDFNPKVADFGLAKLCNRENTHITLTRGRGTPGYAAPELWMPNFPVTHKCDVYSFGMLLFEILGRRRNLDINLSDESQEWFPIWVWKRFDKEQVDELVVACGIEDQHRDVAERMIKVALSCVQYRQESRPVMSAVVKMLEGSVEIPKPLNPFQHMIFPDHHPLPASQTNIDTSMGSGSSVIVTDHEDSSFALAPVVTKLEIESAST 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01561 406 SUPERFAMILY Protein kinase-like (PK-like) 51 340 IPR011009 -
Cca08g01561 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Cca08g01561 406 SMART serkin_6 67 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01561 406 ProSitePatterns Protein kinases ATP-binding region signature. 73 95 IPR017441 GO:0005524
Cca08g01561 406 PANTHER RUST RESISTANCE KINASE LR10-RELATED 7 404 IPR045874 GO:0004672
Cca08g01561 406 PANTHER PUTATIVE-RELATED 7 404 - -
Cca08g01561 406 ProSiteProfiles Protein kinase domain profile. 67 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01561 406 CDD STKc_IRAK 73 341 - -
Cca08g01561 406 Pfam Protein kinase domain 72 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01561 406 Gene3D Phosphorylase Kinase; domain 1 41 143 - -
Cca08g01561 406 Gene3D Transferase(Phosphotransferase) domain 1 144 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01561 Cca-Chr8 45902297 45903852 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01561 56 371 Receptor kinase-like Gene Family AT5G38280 39.752 3.71e-78 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Cca08g01561 Pkinase 2.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01561 - - ccaj:109789001 834.328