Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01558 ATGGAAAGATTCCTAAGCAACATCAACAAGGAGAAACCCATCAGATTCTCTCCTAAACAACTTGATGTAATTACATGGAATTACTCAACCATATTGGGTTCTGGTGCTTTTGAGGTTGTCTACAAAGGGGAATTGTCCAACGGAGAATACGTGGCTGTCAAAGTTATCAATAGTTTGGATATAGCAATGGAAGAGCAACTCAAAGCAGAAGTTGGCACCATTGGAAGAACTTACCATGTCAATCTAGTCCGGCTTTATGGCTTTTGCTTCCACTGGGACAAGCGAGCTCTTGTTTATGAGTTTGTGGAAAATGGTTCTCTCAGCAAGTACTTGTTTGGAAGCCAGAACCAAGACATCGAGTTGGGGAAACTTCATGAGATTGCAATTGGAACAGCAAAAGGAATTGCTTATTTACATGAGGAATGTCAACAAAGGATAATTCATTATGATATTAAACCTGAGAATGTTCTTTTTGATTTGAACTTGGAACCGAAGGTAGCAGATTTTGGCCTGGCAAAGCTTTGTAGCAGAGGAAGTAATGTTTCAGTCAATACACACTTTAGAGGAACAATGGGATACGCTGCTCCTGAAATGTGGAAGCCTTATCCGGTGACTCACAAGTGTGATGTTTATAGTTTTGGTATTCTTCTCTTTGAAATTGTAGGGAGGAGAAGGCATTTTGATGACAACTGCAATGAATCGCAACAATGGTTTCCAAAATGGACATGGGATATGTTTGAGAATAATGAATTGTCTGTAATGCTTTCACTTTGTGGAATTGAAGAGAAAGACAAGGAGAAAGCCGAAAGAATGTCAAAGGTGGCTCTATGGTGTGTTCAGTATTCACCAAATGATAGACCTCTTATGAGTACTGTGGTGAAGATGTTAGAGGGTGAAATTGAAATTTCTCCACCTCCATTTCCCTTCCAAAACCTGGAGTCTAGGAAGCCAAACTTTGCAGATTCAGATACTACATCGTGGCAGACAGAATCTTCTGGAGTAAACAAGCAAAATACATTTCAGATTGAAAAATCTACTTAA 1041 0.3939 MERFLSNINKEKPIRFSPKQLDVITWNYSTILGSGAFEVVYKGELSNGEYVAVKVINSLDIAMEEQLKAEVGTIGRTYHVNLVRLYGFCFHWDKRALVYEFVENGSLSKYLFGSQNQDIELGKLHEIAIGTAKGIAYLHEECQQRIIHYDIKPENVLFDLNLEPKVADFGLAKLCSRGSNVSVNTHFRGTMGYAAPEMWKPYPVTHKCDVYSFGILLFEIVGRRRHFDDNCNESQQWFPKWTWDMFENNELSVMLSLCGIEEKDKEKAERMSKVALWCVQYSPNDRPLMSTVVKMLEGEIEISPPPFPFQNLESRKPNFADSDTTSWQTESSGVNKQNTFQIEKST 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01558 346 Gene3D Transferase(Phosphotransferase) domain 1 102 303 - -
Cca08g01558 346 MobiDBLite consensus disorder prediction 315 346 - -
Cca08g01558 346 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 314 IPR045874 GO:0004672
Cca08g01558 346 ProSiteProfiles Protein kinase domain profile. 26 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01558 346 MobiDBLite consensus disorder prediction 310 346 - -
Cca08g01558 346 SMART serkin_6 26 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01558 346 Gene3D Phosphorylase Kinase; domain 1 3 101 - -
Cca08g01558 346 SUPERFAMILY Protein kinase-like (PK-like) 13 297 IPR011009 -
Cca08g01558 346 Pfam Protein kinase domain 29 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01558 346 PANTHER PUTATIVE-RELATED 1 314 - -
Cca08g01558 346 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01558 Cca-Chr8 45872333 45873373 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01558 15 326 Receptor kinase-like Gene Family AT5G38280 40.187 5.57e-79 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Cca08g01558 Pkinase 2.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01558 - - gmx:100820269 592.423