Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01557 ATGTGGGAAGTGAAAAGCCAATCAGGTATACTGCTAAGCAGCTCAGGATTGCAACTGATAACTACTCTACCTTGTTGGGTTCCGGAGGTTTTGGACAAGTTTATAAAGGAAATTTTAAGTGATGGAACCATTGTGGCTGTGAAGGTTCTACGCGCGAACTCAGATAAGAGAATACAGGAACAATTTATGGCAGAAGTGAGTACAATTGGAAAAATCCATCATTTCAATCTAGTTCAGTTCTATGGATTTTGCTTTGAGAAAGATCTGAGAGCACTAGTTTATGAATACATGGGGAATGGCTCTCTTGACAAGTATCTGTTTCATGAAAACAAGACCCTAAAATATGAAAAGCTTCATGACATTGCAGTTGGAACAGCAAGAGGCATTGCATACTTGCATGAAGATTGCCAACAAAGAATAATCCACTATGACATCAAACCAGAAAATATTCTCTTGGACAGCAACTTCAATCCTAAAGTTGCTGATTTTGGAATGGCTAAGCTTTGCAATAGGGAAATATCTCATATAACTATGACTGGAGGTAGGGGCACTCCTGGTTATGCTGCCCCTGAGCTTTGGATGCCACTTCCTGTAACTCACAAGTGTGATGTTTACAGCTTTGGAATGTTATTATTTGAAATCACGGGAATGAGAAGAAACTTGGACATTAACCTTCTAGAAAGCCAGAAGTGGTTTCCAATATGGGTTTGGAAAAAATATGATGCAGGAGAATTAGAAGAAGTAATAACGGTTTGTGGAATAGAGGATATTTATAAGGAAATGGCTGAAAGAATGGTTAAGGTTGCATTGTCGTGTGTTCAGTATAGGCCAGAATCAAGACCAATAATGAGTGATGTGGTGAAAATGTTGGAAGGTTCAGTGGAAATCTCTAAACCTTTGAACTCATTTCAGAAAATCATGGATGGGACTTTCTCTGATCATTTAGTCCAAGAGTCACGCACCAATGCTAGTAAAAGTATTAATTCTAGCTCTTCTGCTACGGTAACAGAACCAGTAGTTGTACATGATTCTATGAGGAGGTATGATGAAATTGAATTGTGCTTTACCAGTGGTGATGAATGA 1083 0.386 MWEVKSQSGILLSSSGLQLITTLPCWVPEVLDKFIKEILSDGTIVAVKVLRANSDKRIQEQFMAEVSTIGKIHHFNLVQFYGFCFEKDLRALVYEYMGNGSLDKYLFHENKTLKYEKLHDIAVGTARGIAYLHEDCQQRIIHYDIKPENILLDSNFNPKVADFGMAKLCNREISHITMTGGRGTPGYAAPELWMPLPVTHKCDVYSFGMLLFEITGMRRNLDINLLESQKWFPIWVWKKYDAGELEEVITVCGIEDIYKEMAERMVKVALSCVQYRPESRPIMSDVVKMLEGSVEISKPLNSFQKIMDGTFSDHLVQESRTNASKSINSSSSATVTEPVVVHDSMRRYDEIELCFTSGDE 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01557 360 PANTHER RUST RESISTANCE KINASE LR10-RELATED 36 314 IPR045874 GO:0004672
Cca08g01557 360 SMART serkin_6 32 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01557 360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Cca08g01557 360 SUPERFAMILY Protein kinase-like (PK-like) 38 291 IPR011009 -
Cca08g01557 360 Pfam Protein tyrosine and serine/threonine kinase 41 290 IPR001245 GO:0004672|GO:0006468
Cca08g01557 360 ProSiteProfiles Protein kinase domain profile. 1 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01557 360 Gene3D Transferase(Phosphotransferase) domain 1 98 310 - -
Cca08g01557 360 PANTHER PUTATIVE-RELATED 36 314 - -
Cca08g01557 360 Gene3D Phosphorylase Kinase; domain 1 33 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01557 Cca-Chr8 45869928 45871010 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01557 37 295 Receptor kinase-like Gene Family AT5G38280 42.642 7.99e-68 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Cca08g01557 PK_Tyr_Ser-Thr 7.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01557 - - ccaj:109788995 543.888