Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01556 ATGGATGCTGTGGACAGCATAGCCATACTAGCTGGTAGTGCTTTGTTACTGTGGTTCATGATTGTTTGGAGTTTTGTTTTGTGTACAAGATCCAAGAAACAGACTGATAGCAGTCATAATTTTCTGACACTCACTATAGACAAATTTCTGAGTAATATGGAAAGAGAAAAGCCAATCAGATTTACTGATGAGCAGCTCATGATGGCAACTGATAACTACTCTACATTGTTAGGGTCAGGAGGTTTTGGCCAAGTTTATATAGGAAAGTTAAGTGACGGAACCACTGTGGCTGTGAAGGTTCTACGTGGGAACTCTGATAAGAGAATTCAGGAACAGTTTATGGCAGAAGTGGGTACAATTGGAAAACTTTATCATTTCAATCTAGTTCGCTTGTACGGATTTTGCTTTGAACAAGATCTCAGAGCACTGATTTATGAGTACATGGAAAATGGATCTCTTGACAGGTATTTGTTCCATGAAAAGAAGACTTTAGGATATGAAAAACTTTATGAGATTGCAGTTGGAACAGCCAGAGGCATTGCATACTTGCATGAAGATTGCAAACAAAGAATAATCCACTATGACATTAAACCAGGAAATATTCTTTTGGACAGCAACTTCAATCCTAAAGTTGCTGACTTTGGATTGGCTAAGCTTTGCAATAGGGATGATACTCATATAACTATGACTGGAGGTAGGGGCACTCCAGGTTATGCTGCACCTGAGCTTTGGATGCCATTTCCTGTTACTCACAAGTGTGATGTTTACAGCTTTGGAATGCTTTTATTAGAAATCATTGGCCGGAGAAGAAACCTTGACATTAACCTTCCAGCAAGCCAAGAGTGGTTCCCAGTTTGGGTTTGGAAACGATTTGATGCAGGAGAACTAGGAGAGTTAATAATGGCTTGTGGCATAGAGGAGAGGTGTAAGGACATGGCTGAAAGAATGGTTATGGTTGCTTTGTTGTGTGTTCAATATAGGCCAGAATCAAGACCAATGATGAGTGATGTGGTGAAAATGTTGGAAGGCTTAGTTGACATTTCTAAACCTTTGAACCCATTTCAGCATATGATGGATGCAATTTTCCCATGTCATTCTGTGCAAGAATCCCATATTGATGCTAGCACAAGTATTAATTCTATCTCTTCTGTTGTGGTAACTAAACCAGGCATTGTATATGATAGTCCTATTATGAGGAATGATGGCATTGAATTGGCCTCCACCAACTGTGATTAA 1236 0.3948 MDAVDSIAILAGSALLLWFMIVWSFVLCTRSKKQTDSSHNFLTLTIDKFLSNMEREKPIRFTDEQLMMATDNYSTLLGSGGFGQVYIGKLSDGTTVAVKVLRGNSDKRIQEQFMAEVGTIGKLYHFNLVRLYGFCFEQDLRALIYEYMENGSLDRYLFHEKKTLGYEKLYEIAVGTARGIAYLHEDCKQRIIHYDIKPGNILLDSNFNPKVADFGLAKLCNRDDTHITMTGGRGTPGYAAPELWMPFPVTHKCDVYSFGMLLLEIIGRRRNLDINLPASQEWFPVWVWKRFDAGELGELIMACGIEERCKDMAERMVMVALLCVQYRPESRPMMSDVVKMLEGLVDISKPLNPFQHMMDAIFPCHSVQESHIDASTSINSISSVVVTKPGIVYDSPIMRNDGIELASTNCD 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01556 411 Gene3D Phosphorylase Kinase; domain 1 46 147 - -
Cca08g01556 411 Gene3D Transferase(Phosphotransferase) domain 1 148 355 - -
Cca08g01556 411 ProSitePatterns Protein kinases ATP-binding region signature. 77 99 IPR017441 GO:0005524
Cca08g01556 411 CDD STKc_IRAK 77 344 - -
Cca08g01556 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Cca08g01556 411 PANTHER RUST RESISTANCE KINASE LR10-RELATED 17 405 IPR045874 GO:0004672
Cca08g01556 411 SUPERFAMILY Protein kinase-like (PK-like) 52 342 IPR011009 -
Cca08g01556 411 SMART serkin_6 71 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01556 411 ProSiteProfiles Protein kinase domain profile. 71 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01556 411 Pfam Protein tyrosine and serine/threonine kinase 75 341 IPR001245 GO:0004672|GO:0006468
Cca08g01556 411 PANTHER PUTATIVE-RELATED 17 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01556 Cca-Chr8 45864576 45865919 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01556 60 379 Receptor kinase-like Gene Family AT5G38280 42.598 2.59e-79 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Cca08g01556 PK_Tyr_Ser-Thr 2.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01556 - - gmx:100776445 660.218