Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01555 ATGTCAACAGCCGCTGATGATGGCGCTGCAATTGGGATTGTAATAATCTTTGTGGTGGTAGCAGTGAAGATATGTATTCTGATTTGTGTGTGCCGATTAAGAAATCAGAGTGATAGTAAATCAGTAAGTCCAGTTACACATTTTCTGACTCTCACTATTGACAAATTTCTGAATGACATGGAAAGGGAGAAGCCAATCAGGTTCACTGATCAACAGCTAAGGATTGCAACTGATAACTACTCTAACTTGTTGGGTTCAGGAGGGTTTGGAACAGTTTATAAGGGAATATTTACTAATGGGACCATGGTCGCTGTGAAGGTTCTACGTGGGAGTTCAGACAAGAAAATTGAGGAGCAGTTTATGGCAGAAGTGGGTACAATTGGAAGAATTCATCATTTCAATCTTGTTAGGCTTTATGGATTTTGCTTTGAAAGAAACTTGATAGCACTGGTTTATGAGTACATGGGGAATGGCTCTCTTGATAGGTATTTGTTCCAAGAAAAGAAGACCTTAGGATATGAAAAGCTTCATGAGATTGCGATTGGGACAGCAAGAGGCATTGCTTATTTGCATGAAGAGTGCCAACAAAGAATAATCCATTATGACATAAAACCAGGAAATATTCTCTTGGACAGGAATTTCAATCCTAAAGTTGCTGATTTTGGTTTGGCCAAGCTTTGCAATAGGGACAATACTCATATAACCATGACTGGAGGAAGGGGGACTCCTGGTTATGCTGCACCAGAGCTTTGGATGCCGTTTCCCATAACTCACAAGTGTGATGTTTATAGTTTTGGCATGCTGTTATTTGAAATCATAGGTAGGAGAAGAAATCTTGATGTTAAACTTGCTGAAAGCCAAGAGTGGTTCCCAATTTGGGTTTGGAAAAAAATTGATGCTGGATTACTTGGGGAGGTAATAATAGTCTGTGGGATAGAGGAGAAAAGTAAGGAGATTGCAGAAAGAATGGTTAAGATAGCTCTGTGGTGTGTTCAGTATAGGCCAGAATTAAGGCCCACAATGAGTGTTGTGGTGGAAATGCTTGAAGGTTCAGTGGAAATTCCAGAACCTGCGAACCCATTTCAGCATTTGATGGGTGGGACTTACATTGCTCATCCAGTCCAACAAGTGTCACAGACCTATAATACCACAAGTATTTCATCTGTTTCTTCTGTTATGGTAACAGACTCCAGCATTGTATGTGCTACTCCAATTATGAAGAAGTATGAGATTGAATTAGCCTCTAGCAACGTGTGA 1257 0.4018 MSTAADDGAAIGIVIIFVVVAVKICILICVCRLRNQSDSKSVSPVTHFLTLTIDKFLNDMEREKPIRFTDQQLRIATDNYSNLLGSGGFGTVYKGIFTNGTMVAVKVLRGSSDKKIEEQFMAEVGTIGRIHHFNLVRLYGFCFERNLIALVYEYMGNGSLDRYLFQEKKTLGYEKLHEIAIGTARGIAYLHEECQQRIIHYDIKPGNILLDRNFNPKVADFGLAKLCNRDNTHITMTGGRGTPGYAAPELWMPFPITHKCDVYSFGMLLFEIIGRRRNLDVKLAESQEWFPIWVWKKIDAGLLGEVIIVCGIEEKSKEIAERMVKIALWCVQYRPELRPTMSVVVEMLEGSVEIPEPANPFQHLMGGTYIAHPVQQVSQTYNTTSISSVSSVMVTDSSIVCATPIMKKYEIELASSNV 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01555 418 PANTHER RUST RESISTANCE KINASE LR10-RELATED 11 415 IPR045874 GO:0004672
Cca08g01555 418 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Cca08g01555 418 CDD STKc_IRAK 84 350 - -
Cca08g01555 418 ProSiteProfiles Protein kinase domain profile. 78 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01555 418 ProSitePatterns Protein kinases ATP-binding region signature. 84 106 IPR017441 GO:0005524
Cca08g01555 418 Pfam Protein kinase domain 82 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01555 418 Gene3D Phosphorylase Kinase; domain 1 54 154 - -
Cca08g01555 418 SMART serkin_6 78 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01555 418 SUPERFAMILY Protein kinase-like (PK-like) 62 349 IPR011009 -
Cca08g01555 418 PANTHER PUTATIVE-RELATED 11 415 - -
Cca08g01555 418 Gene3D Transferase(Phosphotransferase) domain 1 155 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01555 Cca-Chr8 45861558 45862956 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01555 67 361 Receptor kinase-like Gene Family AT5G38280 42.951 1.00e-78 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Cca08g01555 Pkinase 7.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01555 - - gmx:100803355 723.005