Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01554 ATGTCAACAGCCGCTGATGATGGCGCTGTACTTGAGATTGTAATAATCTCCGCGGTGGTTGCAGTGAAGATATTTTTTTTGATTTGTGCGTTCCGAAAAAGACTTCAGAATAATAGTAAATCAGTTAGTCCAGTTACACATTTTCTGACTCTCACTATTGACAAATTTCTGAATGACATGGAAAGGGAGAAGCCAATCAGGTTCACTGATCAACAACTAAGGATTGCAACTGATAACTATTCTAACTTGTTGGGTTCAGGAGGGTTTGGAACAGTTTATAAGGGAATTTTTACTAATGGGACCATGGTCGCTGTGAAGGTTCTACGTGGGAGGCTTTATGGATTTTGCTTTGAAAGAAACTTGATAGCACTGGTTTATGAGTACATGGGGAATGGATCTCTTGATAAGTATTTGTTCCAAGAAAAGCAGACCTTAGAATCTGAAAAGCTTCATGAGATTGCAATTGGGACAGCAAGAGGCATTGCTTATTTGCATGAAGGGTGCCAACAAAGAATTATCCATTATGACATAAAACCAGGAAATATTCTCTTGGACAGGAATTTCAATCCTAAAGTTGCTGATTTTGGTTTGGCCAAGCTTTGCAATAGGGACAATACTCATATAACCATGACTGGAGGAAGGGGGACTCCTGGTTATGCTGCACCAGAGCTTTGGATGCCGTTTCCCATAACTCACAAGTGTGATGTTTATAGTTTTGGCATGCTGTTATTTGAAATCATAGGTAGGAGAAGAAATCTTGATGTTAAACTTGCTGAAAGCCAAGAGTGGTTCCCAATTTGGGTTTGGAAAAAAATTGATGCTGGATTACTTGGGGAGGTAATAATAGTCTGTGGGATAGAGGAGAAAAGTAAGGAGATTGCAGAAAGAATGGTTAAGATAGCTCTGTGGTGTGTTCAGTATAGGCCAGAATTAAGGCCCAGAATGAGTGTTGTGGTGGAAATGCTTGAAGGTTCAGTGGAAATTCCAGAACCTGCGAACCCATTTCAGCACTTGATGGGTGGGACTTACATTGCTCATCCAGTCCAACAAGTGTCACAGACCTATAATACCACAAGTATTTCATCTGTTTCTTCTGTTATGGTAACAGACTCCAGCATTGTATGTGCTACTCCAATTATGAAGAAGTATGAGATTGAATTAGCTTCTAGCAACGTGTGA 1179 0.4012 MSTAADDGAVLEIVIISAVVAVKIFFLICAFRKRLQNNSKSVSPVTHFLTLTIDKFLNDMEREKPIRFTDQQLRIATDNYSNLLGSGGFGTVYKGIFTNGTMVAVKVLRGRLYGFCFERNLIALVYEYMGNGSLDKYLFQEKQTLESEKLHEIAIGTARGIAYLHEGCQQRIIHYDIKPGNILLDRNFNPKVADFGLAKLCNRDNTHITMTGGRGTPGYAAPELWMPFPITHKCDVYSFGMLLFEIIGRRRNLDVKLAESQEWFPIWVWKKIDAGLLGEVIIVCGIEEKSKEIAERMVKIALWCVQYRPELRPRMSVVVEMLEGSVEIPEPANPFQHLMGGTYIAHPVQQVSQTYNTTSISSVSSVMVTDSSIVCATPIMKKYEIELASSNV 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01554 392 Gene3D Transferase(Phosphotransferase) domain 1 129 331 - -
Cca08g01554 392 ProSiteProfiles Protein kinase domain profile. 78 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01554 392 PANTHER PUTATIVE-RELATED 13 110 - -
Cca08g01554 392 PANTHER RUST RESISTANCE KINASE LR10-RELATED 111 389 IPR045874 GO:0004672
Cca08g01554 392 Gene3D Phosphorylase Kinase; domain 1 53 111 - -
Cca08g01554 392 ProSitePatterns Protein kinases ATP-binding region signature. 84 106 IPR017441 GO:0005524
Cca08g01554 392 SMART serkin_6 78 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01554 392 SUPERFAMILY Protein kinase-like (PK-like) 68 350 IPR011009 -
Cca08g01554 392 PANTHER RUST RESISTANCE KINASE LR10-RELATED 13 110 IPR045874 GO:0004672
Cca08g01554 392 Pfam Protein tyrosine and serine/threonine kinase 111 322 IPR001245 GO:0004672|GO:0006468
Cca08g01554 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Cca08g01554 392 PANTHER PUTATIVE-RELATED 111 389 - -
Cca08g01554 392 Coils Coil 380 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01554 Cca-Chr8 45841848 45843215 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01554 68 338 Receptor kinase-like Gene Family AT5G39030 43.092 4.41e-71 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Cca08g01554 PK_Tyr_Ser-Thr 2.6e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01554 - - gmx:100816921 637.106