Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01547 ATGGAGTGGGACAGCAATTCCGATCTCAGcgccgacgacgacgacgtttcgttcctcgacgacgacgaccacgccgccgccgGCCCCCTCCCCTTCCCCGTCCTCCAAACCGCGCCCTGCGGCTTCGTCGTCACCGACGCGCTCGAGCCCGACCACCCTATCATATACGTCAACGCCGTTTTCGAGATGGTTACCGGCTACCGCGCCGAGGAGGTTCTCGGTCGCAACTGCCGTTTCTTACAGTGTCGAGGTCCATTTGCTAAGAGAAGGCATCCATTGGTGGACTCAACTGTTGTTTCAGAAATTAGAAGATGCCTTGATGAAGGTGTTGAATTCCAAGGTTCTACAATTAAGGAATCTACTAAATCATCAGACCGGTTCCATTCTGTGCTTTCCTCGTTGAATCCTCTTCCAGTGGGGGACCGCAATGTTACTCGTGGAGTTTGTGGGATATTGCAATTGAGTGACGAGGTATTGTCTCTCAAGATACTTGCTCGCTTAACTCCAAGAGATATTGCATCAGTTGGTTCTGTTTCTAGGCGATTGTACGAGATAACAAAGAATGAAGACCTTTGGAGAATGGTGTGCCAAAATGCATGGGGCAGTGAGACTACACGTGTTTTAGAGACTGTGCCTGGTGCAAGGAGACTTGGATGGGGTCGGCTGGCTAGGGAACTGACCACTCTTGAAGCAGCGGCATGGAGGAAACTGACGGTTGGAGGGGTTAACATGCAACCAATGAATGATACCTTTGTATTGGATCTCAATTCTAGCAATCCTGAGTGGCAACATGTCCAGGCTGTGGAAGACAGGGCTTGCTCAATGATGTGTTTGTTCTGGACCTGGATGCAAAGCCTCCAACTTGGCGTGAAATTTCTGGATTGGCACCTCCACTTCCCCGATCCTGGCATAGCTCCTGCACTCTTGATGAAACCTGTCTGGAGAGAGATACCAGTGTCATGGACTCCACCTTCGCGTCTGGGTCACACACTTTCCGTTTATGGTGGTAGGAAAATACTGATGTTTGGGGGTCTGGCCAAGAGTGGGCCTCTTCGATTTCGCTCTAGTGATGTATTCACGATGGATTTAAGTGAGGAGGAGCCATGTTGGAGATGTGTAACAGGGAGTGGAATGCCCGGTGCTGGGAATCCTGGAGGCATAGCTCCTCCTCCTAGACTTGATCATGTGGCTGTGAGCCTTCCAGGTGGGAGAATTCTGATATTTGGTGGGTCTGTTGCAGGCCTTCATTCTGCCTCCCAACTTTACATACTAGATCCAACCGAAGAGAAGCCTACATGGAGAATCCTAAATGTACCTGGGCGCCCTCCAAGATTTGCTTGGGGACATAGTACATGTGTCGTTGGAGGGACAAGAGCTATTGTACTGGGTGGTCAAACTGGGGAGGAATGGATGCTAAGCGGAAAAGGTATCCTTTTTGTGATAGTTTGTATTTTAATATGGCTACAGCCCAAGTGCCCCCCAGGAATTCTTACTCCAGACTCACAATTTATGACACTCACTATGAATAAATTTCTGAATGACATAGAAAAGGAGAAGCCAATCAGgagaagaaacCTTGACATTGAACTTGTTGAAAGCCAGGAGTGGTTTCCAATGTGGGTTTGGAAAAGATTTGATGCTGGAGAATTTGAGGAGTTGTTAATAGCATGTGGGGTAGAAGAGAAAAATAAGGAGATTACAGAGAGAATAGTCAATGTGGCTCTATCTTGTGTTCAGTATAGGCCAGATTCAAGGCCTATAATGAGTGATGTTGTGAAAATGTTGGAAGGTTCAGTGGAAATTCCAAAACCTTTGAACCCATTTCAGCAATTTATGGATGGGAATTTCACTTCTCATCCAGTCCAAGTGCCACTGACCTATACTACAGATACTAGTGGTTCTTCTGTTGTGGTAACTGACACTAGCATTATACATGCTACTCCTACCATGAGGAATATGACATTGAATTAG 1971 0.4551 MEWDSNSDLSADDDDVSFLDDDDHAAAGPLPFPVLQTAPCGFVVTDALEPDHPIIYVNAVFEMVTGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDSTVVSEIRRCLDEGVEFQGSTIKESTKSSDRFHSVLSSLNPLPVGDRNVTRGVCGILQLSDEVLSLKILARLTPRDIASVGSVSRRLYEITKNEDLWRMVCQNAWGSETTRVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGVNMQPMNDTFVLDLNSSNPEWQHVQAVEDRACSMMCLFWTWMQSLQLGVKFLDWHLHFPDPGIAPALLMKPVWREIPVSWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSGKGILFVIVCILIWLQPKCPPGILTPDSQFMTLTMNKFLNDIEKEKPIRRRNLDIELVESQEWFPMWVWKRFDAGEFEELLIACGVEEKNKEITERIVNVALSCVQYRPDSRPIMSDVVKMLEGSVEIPKPLNPFQQFMDGNFTSHPVQVPLTYTTDTSGSSVVVTDTSIIHATPTMRNMTLN 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01547 656 Pfam Kelch motif 326 377 IPR011498 GO:0005515
Cca08g01547 656 Pfam Kelch motif 393 440 IPR011498 GO:0005515
Cca08g01547 656 Gene3D Transferase(Phosphotransferase) domain 1 518 609 - -
Cca08g01547 656 PANTHER ADAGIO PROTEIN 1-LIKE 114 241 - -
Cca08g01547 656 PANTHER ADAGIO PROTEIN 1-LIKE 1 115 - -
Cca08g01547 656 PANTHER ADAGIO PROTEIN 1-LIKE 241 267 - -
Cca08g01547 656 CDD PAS 38 80 IPR000014 -
Cca08g01547 656 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 241 267 - -
Cca08g01547 656 SUPERFAMILY F-box domain 143 213 IPR036047 GO:0005515
Cca08g01547 656 ProSiteProfiles PAS repeat profile. 34 109 IPR000014 -
Cca08g01547 656 Pfam PAS domain 39 149 IPR000014 -
Cca08g01547 656 Gene3D - 152 195 - -
Cca08g01547 656 SUPERFAMILY Kelch motif 314 469 IPR015915 GO:0005515
Cca08g01547 656 Pfam F-box-like 159 197 IPR001810 GO:0005515
Cca08g01547 656 Gene3D PAS domain 32 151 - -
Cca08g01547 656 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 1 115 - -
Cca08g01547 656 PANTHER ADAGIO PROTEIN 1-LIKE 310 474 - -
Cca08g01547 656 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 114 241 - -
Cca08g01547 656 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 310 474 - -
Cca08g01547 656 Gene3D - 235 511 IPR015915 GO:0005515
Cca08g01547 656 SUPERFAMILY PYP-like sensor domain (PAS domain) 34 151 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01547 Cca-Chr8 45762234 45777558 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01547 34 137 AGC Kinase Gene Family AT3G45780 37.500 2.21e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01547 K12115 K12116 jre:108986473 399.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01547 08 45762234 45777558 Cca08g01547 08 45762234 45777558 ECH