Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01531 ATGCCCTGTAAAGTGACGAGCTCCGGCAACACTGAACCTCGACATCACTCAAACTCAAAACCCCACAACCTCAAGATTCGTCTCCCAAACTTAGCATCTTCAATGGAGAGTTCCCTCATCAGTCCGAAACTTGAACTCCACAACCATGGAAGCGTCAAACACCTCGACCATAGCTCACTGCCGTTAATGGACAAGAGAGGTCATAGGGGGAAGCGAAAATCAGAAGGTTGCGATATAGTTATGGAGTCTTCTTTCTTGTTTGGCCTTGGGTACATTGTTGCAGCTGTGTCTCTTTATGATGAATACAACAATGATATTCTTGACTTGAAAAAAGGATCCTGCTTCCCAAGATGGCAGTTAATGAATGCTTTGGTTTATGCATCAGAGGGTATTGGAGTCCACATCATCCAGAAGGCCATAGAGATGGTTCAAGAGCTTGATGGTAATGTCATGCGCTGTGTATGTGATCAGAATGGTAATCATGTCATTCAAAAGTGTATTGAATGTGTCACTGAAGATGCAATACACTTTATTGTGTCAACATTTTTCGATCAAGTTGTGACACTCTCAACCCATCCATATGGTTGTCGGGTGATACAGAGGGTATTGGAGCACTGCAAAGATCCTATAACAGCAGAAAccaaggagctattggatcatcttgaaaatttgtttgcaaatgaaccctttgttgtaaagaagggaaagtatattattgaagtcaagtcacaggggattactaaagggctaattgtagaggacatcctgtcccagatgaccaagaaagggaaatccccagattttgtactgtgcataggggatgatagatctgacgaggatatgtttgagagcttactaaccaaagcttacggtggaacctcttctcctgcaccagaaatcttttcatgcactgttggtcagaaaccaagtaaagctaagtactacttagatgatactgaggatgtgatggggttgcttcaagCTCTTGCACCAAGAGCCGTGGAGAAATGCAAGTACAGGAGCTAG 1026 0.2914 MPCKVTSSGNTEPRHHSNSKPHNLKIRLPNLASSMESSLISPKLELHNHGSVKHLDHSSLPLMDKRGHRGKRKSEGCDIVMESSFLFGLGYIVAAVSLYDEYNNDILDLKKGSCFPRWQLMNALVYASEGIGVHIIQKAIEMVQELDGNVMRCVCDQNGNHVIQKCIECVTEDAIHFIVSTFFDQVVTLSTHPYGCRVIQRVLEHCKDPITAETKELLDHLENLFANEPFVVKKGKYIIEVKSQGITKGLIVEDILSQMTKKGKSPDFVLCIGDDRSDEDMFESLLTKAYGGTSSPAPEIFSCTVGQKPSKAKYYLDDTEDVMGLLQALAPRAVEKCKYRS 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01531 341 MobiDBLite consensus disorder prediction 1 24 - -
Cca08g01531 341 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)-RELATED 213 336 - -
Cca08g01531 341 SUPERFAMILY ARM repeat 126 220 IPR016024 -
Cca08g01531 341 Pfam Trehalose-phosphatase 211 319 IPR003337 GO:0003824|GO:0005992
Cca08g01531 341 MobiDBLite consensus disorder prediction 51 71 - -
Cca08g01531 341 Gene3D - 122 262 IPR011989 -
Cca08g01531 341 Pfam Pumilio-family RNA binding repeat 185 209 IPR001313 GO:0003723
Cca08g01531 341 Pfam Pumilio-family RNA binding repeat 155 179 IPR001313 GO:0003723
Cca08g01531 341 ProSiteProfiles Pumilio RNA-binding repeat profile. 181 219 IPR001313 GO:0003723
Cca08g01531 341 ProSiteProfiles Pumilio RNA-binding repeat profile. 145 180 IPR001313 GO:0003723
Cca08g01531 341 SUPERFAMILY HAD-like 209 330 IPR036412 -
Cca08g01531 341 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 213 336 IPR001830 GO:0003824|GO:0005992
Cca08g01531 341 SMART pum_5 145 180 IPR001313 GO:0003723
Cca08g01531 341 SMART pum_5 181 216 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01531 Cca-Chr8 45241775 45246928 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01531 213 330 Trehalose Biosynthesis Gene Families AT1G23870 61.017 1.80e-42 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01531 K16055 - ccaj:109803620 275.789