Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01527 ATGAATCAATCAATATTCATAGCAGCAAAACTAGTCATGGAAGCTCCAAGATTCTTTGTGGCCTTATTATCATCCTTGTTGCTTCTCATGATTAGTACACAAACAAGCTCAGCTCAACTTACTCGAGGCTTCTACAGAAACACATGTCCCAATGTGGAACAGTTGGTTCGTTCTGCTGTAGAGAACAAGTTCCAGCAGACCTTTGTGACTGCTCCTGCCACTCTTAGACTCTTCTTCCATGATTGCTTTGTGAGGGGTTGTGATGCTTCCATTTTGCTTGCAAATAGTAAAGCAGAGAAAGATCATCCTGATGACATTTCATTAGCTGGGGATGGATTTGACACTGTGGTTAAAGCAAAGGCAGTTGTTGATAGTGATCCTCAGTGTAGAAACAAAGTCTCTTGTGCTGATATACTTGCTCTCGCTACAAGGGATGTCATACatttgACAGGAGGACCATTTTATGAAGTTGAATTGGGAAGACGTGATGGAAGAATATCTACTATTGCCAGTGTTCAACACGGTCTTCCTCACCCTGATTTCAATTTAGATCAACTCAATTCCATGTTTAGTTTCCATGGTCTCTCCCAGACGGATATGATTGCCTTATCAGGTGCACATACAATTGGATTCTCTCACTGCAACCATTTCTCAAAGAGGATCTACAACTTCAGCCCCAGAACCAGAAATCTAATTGACCCAACACTGAACTTAAAATATGCATTCCAACTTAGACAAGCTTGCCCTTTAAGAGTTGATTCAAGAATAGCCATCAACATGGACCTTGTCACACCTCAAAAGTTTGACAACCAATACTTCAAGAATCTCCAGCAAGGAATGGGGCTATTCATTTCTGATCAGGTGTTGGCTACAGATGCAAGGTCAAGGAACACAGTCAACTTATTTGCATCAGATGAAAAGGCTTTTAACAATGCTTTTGTTGAAGCTATTACTAAGATGGGAAGGATAGGTGTTATGACAGGAAGACAAGGGGAAATAAGGTTTGATTGCACCAGGGTGAACTAA 1026 0.4084 MNQSIFIAAKLVMEAPRFFVALLSSLLLLMISTQTSSAQLTRGFYRNTCPNVEQLVRSAVENKFQQTFVTAPATLRLFFHDCFVRGCDASILLANSKAEKDHPDDISLAGDGFDTVVKAKAVVDSDPQCRNKVSCADILALATRDVIHLTGGPFYEVELGRRDGRISTIASVQHGLPHPDFNLDQLNSMFSFHGLSQTDMIALSGAHTIGFSHCNHFSKRIYNFSPRTRNLIDPTLNLKYAFQLRQACPLRVDSRIAINMDLVTPQKFDNQYFKNLQQGMGLFISDQVLATDARSRNTVNLFASDEKAFNNAFVEAITKMGRIGVMTGRQGEIRFDCTRVN 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01527 341 CDD secretory_peroxidase 39 340 IPR033905 GO:0004601|GO:0042744
Cca08g01527 341 Pfam Peroxidase 56 305 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca08g01527 341 PRINTS Plant peroxidase signature 49 68 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g01527 341 PRINTS Plant peroxidase signature 73 93 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g01527 341 PRINTS Plant peroxidase signature 111 124 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g01527 341 PRINTS Plant peroxidase signature 132 142 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g01527 341 PRINTS Plant peroxidase signature 151 166 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g01527 341 PRINTS Plant peroxidase signature 198 210 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g01527 341 PRINTS Plant peroxidase signature 259 274 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g01527 341 PRINTS Plant peroxidase signature 275 292 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g01527 341 PRINTS Plant peroxidase signature 315 328 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g01527 341 PANTHER PEROXIDASE 16-RELATED 23 341 - -
Cca08g01527 341 SUPERFAMILY Heme-dependent peroxidases 39 341 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cca08g01527 341 PRINTS Haem peroxidase superfamily signature 71 85 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca08g01527 341 PRINTS Haem peroxidase superfamily signature 133 150 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca08g01527 341 PRINTS Haem peroxidase superfamily signature 151 163 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca08g01527 341 PRINTS Haem peroxidase superfamily signature 199 214 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca08g01527 341 PRINTS Haem peroxidase superfamily signature 261 276 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca08g01527 341 ProSitePatterns Peroxidases proximal heme-ligand signature. 199 209 IPR019793 -
Cca08g01527 341 PANTHER - 23 341 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g01527 341 Gene3D Peroxidase, domain 2 177 320 - -
Cca08g01527 341 ProSiteProfiles Plant heme peroxidase family profile. 39 341 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca08g01527 341 ProSitePatterns Peroxidases active site signature. 71 82 IPR019794 GO:0004601
Cca08g01527 341 Gene3D - 43 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01527 Cca-Chr8 45181616 45184546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01527 27 341 Peroxidase AT2G18980 73.968 4.91e-173 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01527 K00430 - gmx:100808542 570.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02414 11 51018713 51021347 Cca08g01527 08 45181616 45184546 PCT