Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01525 ATGGCCGTTTCCATGAGAGATTTGGATCCTGCTTTCCAGGGAGCTGGACAAAAGGCTGGACTTGAAATATGGCGTATCGAGAATTTTAATCCAGTTCCTGTCCCTAAGTCCTCTTATGGGAAATTTTTCACTGGAGACTCCTATGTGATCTTAAAGACAACTGCATCAAAAAGTGGTGCTATGCGCCATGACATCCATTACTGGCTTGGTAAAGACACCAGTCAGGATGAGGCTGGCACTGCAGCCATCAAGACAGTTGAACTGGATGCAGCTCTTGGAGGACGTGCTGTTCAGTACCGTGAAGTTCAAGGCCATGAAACTGAAAAGTTCCTGTCTTATTTCAAACCATGTATTATCCCTCAAGAAGGTGGAGTTGCTTCTGGTTTGAAACATGCCGAGGCTGAAAAACATAAGACACGGTTGTTTGTATGCAGAGGGAAACATGTTGTACATGTCAAAGAGGCAAGTTTGAGATTAGTTCCATTTGCTAGAGCTTCACTCAACCATGATGATATTTTTGTTCTGGATACCGAGTCAAAAATTTTCCAATTTAATGGTTCCAATTCATCTATTCAAGAAAGGGCTAAAGCTTTGGAAGTTGTACAGTATATTAAGGATACCTACCATGAAGGGAAATGTGAGGTAGCTGCTGTTGAGGATGGAAAGTTGATGGCTGATCCAGAAACTGGGGAATTCTGGGGTTTCTTTGGCGGATTTGCTCCTCTTCCTCGAAAAACGGCCAGTGATGATGACAAGCCTACTGATTCTTGCCCTCCGAAGCTGCTTTGTGTTGAAAAGGAAAAGGCTGAACCTGTTGAGACTGATTCTTTGAAAAGGGAATTACTTGACACTAATAAATGCTATATCCTTGATTGTGGGTTTGAAGTGTTTGTCTGGATGGGAAGAAATACCTCCCTTGATGAGAGAAAAAGTGCAAGTGGAGTCGCAGATGAGTTAGTCAGTGATATTGATAAACTGAAACCCCAAATAATTCGTGTGATAGAAGGATTTGAAACAGTGATGTTCAGGTCCAAATTTGATTCTTGGCCTCAGACAACTGATGTAACAGTATCTGAAGATGGTCGTGGCAAGGTAGCAGCACTTCTAAAACGTCAAGGAGTAAATGTAAAGGGCTTGTTGAAAGCTGATCCAGTGAGGGAAGAGCCCCAACCCCACATTGATTGTACAGGACATTTGCAGGTTTGGCGCGTCAATGGCCAGGAAAAGATTCTTCTTCAAGCTTCTGATCAGTCAAAATTTTATAGCGGAGATTGCTGCATCTTTCAGTATACATATCCTGGAGAGGATAAAGAAGATTGTCTTATAGGAACGTGGATTGGAAAGAATAGTGTTGAGGAAGAACGAGCTTCAGCCAATTCATTGGCAAGCAAAATGGTTGAGTCAATGAAGTTTCTTGCTTCCCAGGCTCGTATATACGAAGGCAATGAACCAATTCAGTTTCATTCTATCCTCCAAAGCTTCATTGTTTTTAAGGGTGGCCTTAGTGAAGGATACAAGAGTTACATTGCAGAAAAGGGAATTCCTGATGAGACATACAATGAGAATGGTGTTGCATTATTCCGCATCCAGGGCTCTGGACCAGACAATATGCAAGCTATACAAGTTGAACCAGTTGCTTCTTCCTTGAATTCCTCTTATTGTTACATACTTCATAATGGGCCTGCTGTCTTTACTTGGTCTGGAAACTCTACAAGTGCAGAAGACCAGGAACTTGTTGAGAGGATGCTGGATTTGATAAAGCCAAATTTACAATCCAAACCACAAAGGGAAGGTTCCGAATCTGAACAGTTTTGGGAATTGTTAGGAGGAAAATCAGAATATCCCAGTCAGAAGATTCTTAGAGAGGCAGAAAGTGATCCTCACCTATTTTCTTGTCACTTCTCTAAAGAGGTATATAACTTCTCCCAGGATGATTTAATGACAGAAGACATTTTCATCTTGAATTGTCGCACGGATATCTTTGTCTGGGTTGGACAGCAGGTCGACTCCAAGAGTAGAATGCAGGCTCTAACAATTGGTGAGAAATTTCTTGAGCATGATTTTCTTCTAGAAAAATTATCTCGTCTAGCTCCAGTATATGTTGTCATGGAAGGGAGCGAGCCACCTTTCTTCACACGCTTCTTCAAATGGGATTCTGCAAAATCTGCAATGCTGGGGAACTCATTTCAAAGGAAGCTTACAATTGTGAAAAGTGGGGGTGCACCACTTTTGGATAAACCCAAACGGAGAACACCAGTATCTTATGGGGGACGGTCGAGTAGCGTGCCAGATAAATCCCAGCGTTCCTCCCGCAGCATGTCCGTCAGTCCTGATCGTGTTCGCGTGAGGGGCAGGTCTCCAGCCTTTAATGCCCTAGCAGCTAATTTTGAGAACCCTAATGCAAGGAACCTTTCAACCCCACCTCCAGTAGTTAGAAAGCTGTATCCAAAATCTGTGACACCAGATTCTGCAATACTGGCACCAAAATCTGCAGCCATAGCTGCACTTAGTTCTTCTTTTGAACAGCCACCTTCAGCACGAGAAAGTTTGATACCTCGTTCAGTTAAAGTGAGTCCAGTAATGCCCAAATCAAACCCTGAGAAAAATGACAAGGAGAATTCTGTGAGCGGCAGAGTTGAATCACTAACCATACAGGAAGATGTGAAAGAGGATGAAGTTGAAGATGAGGAAGGTCTTGTGACTTACCCATATGAATGCCTTAAAATAACATCCACAGATCCTGTAACAAATATTGATGTGACCAAGCGAGAGACTTATCTATCATCTGCGGAGTTCAAAGAGAAATTTGGGATGTCCAAGGATGCTTTTTACAATTTAGGTTGCAGTGAGGAACTAAACGTTGAAGTAAAAGGGACAGCATCAGTGTTTTTTTTAGCATAG 2901 0.4243 MAVSMRDLDPAFQGAGQKAGLEIWRIENFNPVPVPKSSYGKFFTGDSYVILKTTASKSGAMRHDIHYWLGKDTSQDEAGTAAIKTVELDAALGGRAVQYREVQGHETEKFLSYFKPCIIPQEGGVASGLKHAEAEKHKTRLFVCRGKHVVHVKEASLRLVPFARASLNHDDIFVLDTESKIFQFNGSNSSIQERAKALEVVQYIKDTYHEGKCEVAAVEDGKLMADPETGEFWGFFGGFAPLPRKTASDDDKPTDSCPPKLLCVEKEKAEPVETDSLKRELLDTNKCYILDCGFEVFVWMGRNTSLDERKSASGVADELVSDIDKLKPQIIRVIEGFETVMFRSKFDSWPQTTDVTVSEDGRGKVAALLKRQGVNVKGLLKADPVREEPQPHIDCTGHLQVWRVNGQEKILLQASDQSKFYSGDCCIFQYTYPGEDKEDCLIGTWIGKNSVEEERASANSLASKMVESMKFLASQARIYEGNEPIQFHSILQSFIVFKGGLSEGYKSYIAEKGIPDETYNENGVALFRIQGSGPDNMQAIQVEPVASSLNSSYCYILHNGPAVFTWSGNSTSAEDQELVERMLDLIKPNLQSKPQREGSESEQFWELLGGKSEYPSQKILREAESDPHLFSCHFSKEVYNFSQDDLMTEDIFILNCRTDIFVWVGQQVDSKSRMQALTIGEKFLEHDFLLEKLSRLAPVYVVMEGSEPPFFTRFFKWDSAKSAMLGNSFQRKLTIVKSGGAPLLDKPKRRTPVSYGGRSSSVPDKSQRSSRSMSVSPDRVRVRGRSPAFNALAANFENPNARNLSTPPPVVRKLYPKSVTPDSAILAPKSAAIAALSSSFEQPPSARESLIPRSVKVSPVMPKSNPEKNDKENSVSGRVESLTIQEDVKEDEVEDEEGLVTYPYECLKITSTDPVTNIDVTKRETYLSSAEFKEKFGMSKDAFYNLGCSEELNVEVKGTASVFFLA 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01525 966 SUPERFAMILY Actin depolymerizing proteins 515 619 - -
Cca08g01525 966 CDD gelsolin_S5_like 522 613 - -
Cca08g01525 966 Gene3D Villin headpiece domain 899 948 IPR036886 GO:0003779|GO:0007010
Cca08g01525 966 MobiDBLite consensus disorder prediction 754 776 - -
Cca08g01525 966 MobiDBLite consensus disorder prediction 858 895 - -
Cca08g01525 966 PANTHER VILLIN 1 947 IPR007122 GO:0051015
Cca08g01525 966 PANTHER VILLIN-3-LIKE 1 947 - -
Cca08g01525 966 Gene3D Severin 254 361 IPR029006 -
Cca08g01525 966 SMART VILL_6 524 611 IPR007122 GO:0051015
Cca08g01525 966 SMART VILL_6 259 349 IPR007122 GO:0051015
Cca08g01525 966 SMART VILL_6 139 239 IPR007122 GO:0051015
Cca08g01525 966 SMART VILL_6 627 718 IPR007122 GO:0051015
Cca08g01525 966 SMART VILL_6 19 117 IPR007122 GO:0051015
Cca08g01525 966 SMART VILL_6 397 494 IPR007122 GO:0051015
Cca08g01525 966 Gene3D Severin 133 253 IPR029006 -
Cca08g01525 966 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 260 393 IPR036180 -
Cca08g01525 966 CDD gelsolin_S6_like 626 719 - -
Cca08g01525 966 Gene3D Severin 7 132 IPR029006 -
Cca08g01525 966 Gene3D Severin 393 507 IPR029006 -
Cca08g01525 966 SUPERFAMILY VHP, Villin headpiece domain 886 946 IPR036886 GO:0003779|GO:0007010
Cca08g01525 966 ProSiteProfiles Headpiece (HP) domain profile. 896 961 IPR003128 GO:0003779|GO:0007010
Cca08g01525 966 Pfam Gelsolin repeat 638 711 IPR007123 -
Cca08g01525 966 Pfam Gelsolin repeat 160 222 IPR007123 -
Cca08g01525 966 Pfam Gelsolin repeat 28 111 IPR007123 -
Cca08g01525 966 Pfam Gelsolin repeat 270 342 IPR007123 -
Cca08g01525 966 CDD gelsolin_S4_like 393 490 - -
Cca08g01525 966 CDD gelsolin_S3_like 259 348 - -
Cca08g01525 966 MobiDBLite consensus disorder prediction 740 781 - -
Cca08g01525 966 SUPERFAMILY Actin depolymerizing proteins 387 533 - -
Cca08g01525 966 SUPERFAMILY Actin depolymerizing proteins 130 248 - -
Cca08g01525 966 SUPERFAMILY Actin depolymerizing proteins 600 716 - -
Cca08g01525 966 CDD gelsolin_S1_like 12 124 - -
Cca08g01525 966 Gene3D Severin 618 732 IPR029006 -
Cca08g01525 966 PRINTS Gelsolin family signature 328 349 IPR007122 GO:0051015
Cca08g01525 966 PRINTS Gelsolin family signature 441 459 IPR007122 GO:0051015
Cca08g01525 966 PRINTS Gelsolin family signature 643 665 IPR007122 GO:0051015
Cca08g01525 966 PRINTS Gelsolin family signature 474 494 IPR007122 GO:0051015
Cca08g01525 966 PRINTS Gelsolin family signature 597 616 IPR007122 GO:0051015
Cca08g01525 966 PRINTS Gelsolin family signature 537 557 IPR007122 GO:0051015
Cca08g01525 966 PRINTS Gelsolin family signature 672 691 IPR007122 GO:0051015
Cca08g01525 966 PRINTS Gelsolin family signature 416 432 IPR007122 GO:0051015
Cca08g01525 966 SUPERFAMILY Actin depolymerizing proteins 9 147 - -
Cca08g01525 966 Gene3D Severin 522 617 IPR029006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01525 Cca-Chr8 45135134 45152509 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01525 - - gmx:100808499 1743.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01525 08 45135134 45152509 Cca11g02417 11 51050764 51069576 PCT