Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01497 ATGACGGAGCAAACCAAGTTGAGCGTGTTGTGCAGCCTCTTCACGTGGACGCAGCGAGCCAAGTCGTCGGCGAAGAAGCGCGCCAAGTTCCGCAAGTTCCTCGACGCCTTCTGCACCGACCGCAACTTCTTCCccgccGAGTCCGTCCTCGCCACCTCCCTCATCGACGCCCTCGGCATCTCCCGCGACTCCCCCGACGCCCTCCGCCTCGTCAACTGGCGCAAGGGCGGCGCCTCCACCGGCGCCACCGCCGGAAATTTCGCCCTCGTCGCCTCCGAGGTGCTGCAGCGGAGGCAGGGGACGGCTTCGGGTGGATTGACGATCAGGGAGCTTAATGAGTTGCTTGACAGGTTGGCTTCCGCTGAAAGCAGGGCTGAGAAAATTTTGGTTCTTTCTACCCTTATCCAAAAGACTAATGCACAGGAAATGAAGTGGATTATCATGATAATTCTGAAAGATCTAAAGCTGGGAATTAGTGAAAAAAGCATTTTTCATGAGTTCCATCCTGATGCAGAAGACTTGTTTAATGTTACCTGTGACTTAAAATTAGTATGTGAAAAGCTAAGGGATCGAAATCAACGTCATAAGCGGCAGGATATTGAAGTTGGAAAAGCTGTACGCCCCCAATTAGCTAAGAGAGTTGGTAATGCAACTGAAGCATGGAAGAAGCTTCATGGGAAGGAAGTGGTTGTTGAGTGCAAATTTGATGGTGACCGCATTCAAATTCATAAAAATGGAACTGAGATACATTTTTTCTCAAGGAACTTTATTGATCATTCTGAATATGCACATGCGATGTCAGAAATCATAATTCAAAATGTTCTTGTAGATAGGTGCATCCTTGATGGTGAAATGTTGGTGTGGGACACATCCTTGAAACGTTTTGCTGAGTTTGGCTCAAATCAGGAAATAGCCAAGGCAGCAAGAGATGGACTTGATAGTGATAGACAGTGGCTAGATGTTGCATTTGATATCCTTTATTTTGGAGATACTAGTGTGATTCACCAAACTTTGAAGGAACGACATGAGATTTTGTGTAAAATTGTAAGGCCAATGAAGGGTCGTTTGGAAATTTTAGTACCTAATGGTGGTATCAACAGCCATCTTTCTTCTGGTGAACCTTGTTGGTCATTTATTGCTCATACTGTGGATGAAGTCGAGAGGTTTTTCAAAGAAACCATTGAAAATAGAGACGAGGGAATTGTTTTAAAAGACTGCAGCTCCAAATGGGAACCTAGTGATCGTAGTGGAAAGTGGCTGAAACTGAAGCCAGAATACATTCAAGCTGGTTCTGATCTGGATGTACTTATCATAGGTGGTTACTATGGTTCTGGACGACGTGGAGGAGAGGTTGCTCAGTTCTTGGTTGGCCTTGCAGAGCGTCCATCCCCAAATACACACCCTAAGCGATTTATCTCCTTTTGCAGAGTTGGTACTGGACTCTCTGATGATGAGCTTGATGCTGTAGTAACCAAACTAAAACCTTACTTCAGAAAGTATGAATATCCAAAGAAGAGGCCACCAAGTTTTTATCAAGTAACTAATCATTCAAAGGAAAGACCTGATGTGTGGGTTGATAGCCCTGAGAAATCAATTATTCTGTCTATAACCAGTGACATCCGAACTATAGAATCTGAGGTATTTGCTGCTCCCTACAGTCTGAGATTTCCCAGGATTGACAGGGTGAGATATGATAAAGCTTGGCATGAATGCCTTGATGTTCAATCATTTATAGAACTAGTACATTCTAGCAATGGTACCACACAGAGGGGTACAGAATATGGCAGCAAGCAGGACAATAAACCAAAGCAAACAAAGTCCTCCAAAAGGGGAGAAAAGAAAAACATGTCCATTGTTCCTTCGCATTTAATTCAAACTGATGTTTCCAGCATTAAGGGGAGTTCCTTAATATTTTCCAACATGATGTTCTACTTTGTTAATGTGCCTCCATCTCATTCTCTTGAGTCCTTTCACAAAATAATTGCTGAGAATGGGGGAACTTTTTCAATGAATTTGAATAACTCAGTCACGCATTGTGTTGCAGCAGACAGCAAGGGGTTTAAATTCGAAGCAGCAAAACGTCACGGTGATATCATTCATTATTCTTGGGTATTAGATTCCTATGCACAAAAGAAGCTTGTCTGCTTACATCCAAAGTACTTCCTCTTCCTATCTGAACAGACAAAGAAGAAGTTACAAGAAGAAATTGATGAGTTCTCAGACTCTTACTACTTGGATCTTGCTCTTGGAGACATCAAGCAGCTCTTAAGCAATATTCATAGGTCAGAAGATGTCAGCACTGTCGATCATTACAGGAAAAAATACTGTCCAAAGGATAAGTGGTCTTTATTTTATGGATGCTCCATTTATTTCCACACTTCAATACCTTCATTGAAAGGAGATTGGCATTTTATATTGCAACTTTCTTTGAGGAGATTCAAGGTTGAAGTTCTCATGGGTGGTGGAAAAGTTACCTCTAATATTGCATGTGCATCTCATTTAGTGGCCTTGCTCGTTCCAGGATGTCAGACTGACTTTGAAGAAATAGAGAGTAGTTTCACTTCAGTAGAAAGAAAATTTCTCCGAAGCAAGAGGCTGTGCATAGTTAAATCCCAGTGGTTAGAAGATTGTTCAGACAGTAGCCAAAGATTATCAGAAGACTCTTACAGTTTGAAGCCCTGGGGAATAGAAGAGTCAACTGCTGAAGATTGTGAACAGGACTTGGTGTTAGAGGCTCATCAGAGTGGATATAATGTAGAAGACCAAAATATTTCTAACTCTGTCAAGGGAAATCAACAGAGAAGTGCAAAAGCTGCTTGTGAAGACAGTATGGCTTTGGTATCCCAAGAGAAGGGTGGCCAAAGAAAAAGAGGAAGACCAGCAGGCAGTGGTACCAAAAAAGTAAAACCAGCTGCCAAACAAGCCCGAAGAGCACGAGTACAAAATGTGAAAAAGCCTGCTAAGTTATATGAATATGAATCATCAGATGAAAGTGATTCTCATGACAAAAGACCAATTGAGCAGGAGATTGACACTAGCGCAAGAAGTCTTGATTTTTACAAGAAACATTCAGAACCCCAGGAGAGTGAGGAACGTGGATATGTCCAAGTTGCTGAAACAGTGGAAAGTTCTAGACCAGATAATATAGACAAGCAAGAAGACTTGAAAAGCAATGAACATGAAAGAACATTGGTTCCTGAATTAGAAATGGCTGATAAGCACAATGAGGTGTCTGAGAAACTTGAAATTTCAGCTGACCCCTTGCAGGCGATGTTATTTGACATGATTCCTAGCCTTGCCACCAAAAAAGATGAGCAACCTATGAATCTTAGTCTTAGAGAAGAGAAGCAACCAGAAATCTCCAATGCAGAGGCAGAGAAGCTACCAGAAAGCTCCAATGCAGAAGAAGAGCCTACAACTATAAAGAAAAAGAAAGTTAGCTACAAGGATGTTGCTAGTCAGCTGCTGAAGGATTGGTAG 3480 0.4224 MTEQTKLSVLCSLFTWTQRAKSSAKKRAKFRKFLDAFCTDRNFFPAESVLATSLIDALGISRDSPDALRLVNWRKGGASTGATAGNFALVASEVLQRRQGTASGGLTIRELNELLDRLASAESRAEKILVLSTLIQKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVGNATEAWKKLHGKEVVVECKFDGDRIQIHKNGTEIHFFSRNFIDHSEYAHAMSEIIIQNVLVDRCILDGEMLVWDTSLKRFAEFGSNQEIAKAARDGLDSDRQWLDVAFDILYFGDTSVIHQTLKERHEILCKIVRPMKGRLEILVPNGGINSHLSSGEPCWSFIAHTVDEVERFFKETIENRDEGIVLKDCSSKWEPSDRSGKWLKLKPEYIQAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLAERPSPNTHPKRFISFCRVGTGLSDDELDAVVTKLKPYFRKYEYPKKRPPSFYQVTNHSKERPDVWVDSPEKSIILSITSDIRTIESEVFAAPYSLRFPRIDRVRYDKAWHECLDVQSFIELVHSSNGTTQRGTEYGSKQDNKPKQTKSSKRGEKKNMSIVPSHLIQTDVSSIKGSSLIFSNMMFYFVNVPPSHSLESFHKIIAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKRHGDIIHYSWVLDSYAQKKLVCLHPKYFLFLSEQTKKKLQEEIDEFSDSYYLDLALGDIKQLLSNIHRSEDVSTVDHYRKKYCPKDKWSLFYGCSIYFHTSIPSLKGDWHFILQLSLRRFKVEVLMGGGKVTSNIACASHLVALLVPGCQTDFEEIESSFTSVERKFLRSKRLCIVKSQWLEDCSDSSQRLSEDSYSLKPWGIEESTAEDCEQDLVLEAHQSGYNVEDQNISNSVKGNQQRSAKAACEDSMALVSQEKGGQRKRGRPAGSGTKKVKPAAKQARRARVQNVKKPAKLYEYESSDESDSHDKRPIEQEIDTSARSLDFYKKHSEPQESEERGYVQVAETVESSRPDNIDKQEDLKSNEHERTLVPELEMADKHNEVSEKLEISADPLQAMLFDMIPSLATKKDEQPMNLSLREEKQPEISNAEAEKLPESSNAEEEPTTIKKKKVSYKDVASQLLKDW 1159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01497 1159 CDD OBF_DNA_ligase_IV 430 574 - -
Cca08g01497 1159 Gene3D DNA ligase/mRNA capping enzyme 202 425 - -
Cca08g01497 1159 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 47 581 IPR000977 GO:0003910|GO:0005524|GO:0071897
Cca08g01497 1159 Pfam DNA ligase N terminus 40 168 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Cca08g01497 1159 ProSiteProfiles BRCT domain profile. 633 721 IPR001357 -
Cca08g01497 1159 ProSiteProfiles BRCT domain profile. 779 891 IPR001357 -
Cca08g01497 1159 PANTHER DNA LIGASE 4 2 892 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Cca08g01497 1159 MobiDBLite consensus disorder prediction 1044 1063 - -
Cca08g01497 1159 Gene3D - 1 200 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Cca08g01497 1159 MobiDBLite consensus disorder prediction 1101 1148 - -
Cca08g01497 1159 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 232 240 IPR016059 GO:0003909
Cca08g01497 1159 MobiDBLite consensus disorder prediction 921 1063 - -
Cca08g01497 1159 MobiDBLite consensus disorder prediction 586 616 - -
Cca08g01497 1159 MobiDBLite consensus disorder prediction 1107 1148 - -
Cca08g01497 1159 SUPERFAMILY Nucleic acid-binding proteins 431 582 IPR012340 -
Cca08g01497 1159 Pfam ATP dependent DNA ligase domain 208 423 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Cca08g01497 1159 ProSitePatterns ATP-dependent DNA ligase signature 2. 399 423 IPR016059 GO:0003909
Cca08g01497 1159 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 167 424 - -
Cca08g01497 1159 Gene3D BRCT domain 779 891 IPR036420 -
Cca08g01497 1159 Coils Coil 108 131 - -
Cca08g01497 1159 Pfam ATP dependent DNA ligase C terminal region 447 566 IPR012309 GO:0003910|GO:0006281|GO:0006310
Cca08g01497 1159 SUPERFAMILY BRCT domain 637 722 IPR036420 -
Cca08g01497 1159 CDD Adenylation_DNA_ligase_IV 196 428 IPR044125 GO:0005524
Cca08g01497 1159 Gene3D - 426 587 IPR012340 -
Cca08g01497 1159 MobiDBLite consensus disorder prediction 596 616 - -
Cca08g01497 1159 MobiDBLite consensus disorder prediction 921 938 - -
Cca08g01497 1159 MobiDBLite consensus disorder prediction 984 1032 - -
Cca08g01497 1159 ProSiteProfiles ATP-dependent DNA ligase family profile. 322 460 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Cca08g01497 1159 SUPERFAMILY BRCT domain 773 893 IPR036420 -
Cca08g01497 1159 SMART BRCT_7 635 711 IPR001357 -
Cca08g01497 1159 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 84 190 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Cca08g01497 1159 Pfam BRCT domain, a BRCA1 C-terminus domain 635 717 IPR001357 -
Cca08g01497 1159 Gene3D BRCT domain 648 761 IPR036420 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01497 196 583 Core DNA Replication Machinery Family AT1G08130 27.723 9.68e-30 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01497 K10777 - gmx:100816002 2016.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01497 08 44196513 44215200 Cca08g01497 08 44196513 44215200 ECH