Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01496 ATGGACAACATTGGCGAAGAGTACAAGCATTACTGGGAGACCAACATGTTCCTCCAAACCCAAGAGCTCGACAGTTGGGGGTTGGATGAGGCCTTATCGGGGTACTACGATTCGAGTTCCCCTGATGGTGCTGCTTCCTCGGCTGCATCTAAGAACATTGTTTCCGAGAGGAATCGGAGGAAGAAGCTCAATGAAAGGCTTTTTGCTCTTAGATCGGTGGTGCCAAACATTAGCAAGATGGATAAGGCTTCGATTATTAAGGATGCTATTGAGTACATCCAGCACTTGCACGAGCAGGAAAAGATTATCCAAGCTGAGATAATGGAGCTTGAATCGGGTATGCCAAAGAAGAGTAGTCCAAGCTATGACTTTGAGCTGGAGCAGCTCCCTGTGGTGCTCAGGTCCAAGAAGAAGAGAACAGAGAACCTATATGATTCCATCACCTCAAGAAACTCCCCAATTGAACTCCTTAATCTGCAGGTTACATACATGGGGGAGAAGACAGTTGTGGTGAGTTTGACATGCAGCAAAAGGACAGACACAATGGTGAAACTGTGCGAGGTGTTCGAATCCTTGAGGCTCAAGATCATCACAGCAAACATCACCTCGTTTTCGGGGGGGCTTTTGAAGACAGTCTTCATTGAGGCAAATGAAGAAGAGAAAGATCATTTGAAGATAAAGATCAAGACAGCCATTGAAGCTCTTAATGACCCTCAAAGCCCAATGAGCATTTGA 735 0.4585 MDNIGEEYKHYWETNMFLQTQELDSWGLDEALSGYYDSSSPDGAASSAASKNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIEYIQHLHEQEKIIQAEIMELESGMPKKSSPSYDFELEQLPVVLRSKKKRTENLYDSITSRNSPIELLNLQVTYMGEKTVVVSLTCSKRTDTMVKLCEVFESLRLKIITANITSFSGGLLKTVFIEANEEEKDHLKIKIKTAIEALNDPQSPMSI 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01496 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 96 IPR011598 GO:0046983
Cca08g01496 244 Coils Coil 214 234 - -
Cca08g01496 244 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 238 - -
Cca08g01496 244 SMART finulus 53 102 IPR011598 GO:0046983
Cca08g01496 244 Gene3D - 44 112 IPR036638 GO:0046983
Cca08g01496 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 113 IPR036638 GO:0046983
Cca08g01496 244 Pfam Helix-loop-helix DNA-binding domain 54 97 IPR011598 GO:0046983
Cca08g01496 244 PANTHER TRANSCRIPTION FACTOR BHLH35 1 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01496 Cca-Chr8 44186542 44194006 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01496 2 215 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 64.055 6.83e-87 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca08g01496 HLH 2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01496 - - gmx:100817978 433.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01496 08 44186542 44194006 Cca08g01496 08 44186542 44194006 ECH
Cca11g02439 11 51348075 51354535 Cca08g01496 08 44186542 44194006 PCT