Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01489 ATGGGCGAAGAGGCAGCGAAAGCTTTGGTTCCCGAATCGGTGCTGAAGAAGCAAAAGAGGAATGAGGAGTGGGCTTTGGCCAAAATACAGGAACTTGATGCCGCCCAAAAGAAGAGGTTTGAAACGCGCAAACTCATTTTTAGCAGAGCCAAACAGTACGCCAAGGAATACGACGAGCAGCAAAAGGAACTCATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTCTATGTGGATCCCGAAGCCAAGCTCTTGTTCATTATCAGGATCCGCGGTATCAATGCGATGCACCCGAAAACAAGGAAGATTTTGCAGCTTCTGCGTTTGAGACAGGTAACTTTCAGATACACATTAAGGCTTTTTAGGTTTTCTTTTAATTGGCTCAAAATTGAAAGGGTTGAGCCATATGTTACCTATGGGTACCCTAATTTGAAGAGTGTAAGGGAATTGATCTACAAGAGGGGCTTCGGAAAAGTTAACAAGCAGAGAATTGCTCTGACAGACAACTCTATTATTGAGGAGACTCTGGGGAAGAATGGGATCATTTGCATCGAAGATCTGATCCATGAGATAATGACTGTTGGACCTCACTTCAGGGAGGCAAACAATTTTCTATGGCCTTTCAAGCTCAAAGCTCCCCTAGGTGGTCTGAAGAAGAAAAGAAATCATTATGTTGAAGGTGGTGACGCTGGCAACAGGGAAGATTACATAAATGAGCTTATTAGAAGGATGAATTAG 741 0.4386 MGEEAAKALVPESVLKKQKRNEEWALAKIQELDAAQKKRFETRKLIFSRAKQYAKEYDEQQKELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAMHPKTRKILQLLRLRQVTFRYTLRLFRFSFNWLKIERVEPYVTYGYPNLKSVRELIYKRGFGKVNKQRIALTDNSIIEETLGKNGIICIEDLIHEIMTVGPHFREANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNREDYINELIRRMN 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01489 246 Gene3D - 85 192 IPR036919 -
Cca08g01489 246 Gene3D - 193 246 IPR036919 -
Cca08g01489 246 CDD Ribosomal_L7_archeal_euk 85 246 IPR035808 -
Cca08g01489 246 Pfam Ribosomal protein L30p/L7e 86 138 IPR016082 -
Cca08g01489 246 PANTHER 60S RIBOSOMAL PROTEIN L7-RELATED 7 246 - -
Cca08g01489 246 Pfam Ribosomal L30 N-terminal domain 10 81 IPR012988 -
Cca08g01489 246 PANTHER 60S RIBOSOMAL PROTEIN L7 7 246 IPR039699 -
Cca08g01489 246 TIGRFAM uL30_euk: 60S ribosomal protein uL30 11 246 IPR005998 GO:0000463|GO:0003735|GO:0022625
Cca08g01489 246 Coils Coil 50 74 - -
Cca08g01489 246 SUPERFAMILY Ribosomal protein L30p/L7e 85 246 IPR036919 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01489 Cca-Chr8 43987722 43992086 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01489 1 246 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 76.423 9.99e-139 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01489 K02937 - gmx:100500011 407.142