Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01487 ATGGGCGAAGAGGCAGCGAAAACTTTGGTTCCCGAATCGGTGCTGAAGAAGCAAAAAAGGAATGAGGAGTGGGCTTTGGCCAAAAAACAGGAACTTGATGCCGCCCAAAAGAAGAGGTTTGAAACGCGCAAACTCATTTTTAGCAGAGCCAAACAGTACGCCAAGGAATACGACCAGCAGCAAAAGGAACTCATTAGGTTGAAGCGTGAAGCCAAACTTAAGGGAGGGTTTTATGTGGATCCCGAAGCTAAGCTCTTGTTCATTATCAGGATCCGCGGTATCAATGCAATGCACCCCAAAACAAGGAAGATTTTGCAGCTTCTGCGTTTGAGACAGATATTTAATGGCGTTTTTCTCAAAGTTAACAAAGCAACCGTGAATATGCTGCGCAGGGTTGAGCCATATGTTACCTATGGGTACCCTAATTTGAAGAGTGTAAGAGAATTGATCTACAAGAGGGGCTTCGGAAAAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAGGAGACTCTGGGGAAGAATGGGATCATTTGCATCGAAGATCTGATCCATGAGATAATGACTGTTGGACCTCACTTCAGGGAGGCAAACAATTTTCTATGGCCTTTCAAGCTCAAAGCTCCCCTAGGTGGTCTGAAGAAGAAAAGAAATCATTATGTTGAAGGTGGTGACGCTGGCAACAGGGAAGATTACATAAATGAGCTTATTAGAAGGATGAATTAG 735 0.4354 MGEEAAKTLVPESVLKKQKRNEEWALAKKQELDAAQKKRFETRKLIFSRAKQYAKEYDQQQKELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVRELIYKRGFGKVNKQRIALTDNSIIEETLGKNGIICIEDLIHEIMTVGPHFREANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNREDYINELIRRMN 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01487 244 PANTHER 60S RIBOSOMAL PROTEIN L7-RELATED 6 244 - -
Cca08g01487 244 Pfam Ribosomal L30 N-terminal domain 10 81 IPR012988 -
Cca08g01487 244 CDD Ribosomal_L7_archeal_euk 85 244 IPR035808 -
Cca08g01487 244 Pfam Ribosomal protein L30p/L7e 86 136 IPR016082 -
Cca08g01487 244 PANTHER 60S RIBOSOMAL PROTEIN L7 6 244 IPR039699 -
Cca08g01487 244 TIGRFAM uL30_euk: 60S ribosomal protein uL30 11 244 IPR005998 GO:0000463|GO:0003735|GO:0022625
Cca08g01487 244 Gene3D - 85 190 IPR036919 -
Cca08g01487 244 Gene3D - 191 244 IPR036919 -
Cca08g01487 244 SUPERFAMILY Ribosomal protein L30p/L7e 85 244 IPR036919 -
Cca08g01487 244 Coils Coil 50 74 - -
Cca08g01487 244 ProSitePatterns Ribosomal protein L30 signature. 104 136 IPR018038 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01487 Cca-Chr8 43924176 43926802 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01487 1 244 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 83.197 1.27e-154 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01487 K02937 - gmx:100500011 433.721