LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca08g01484	ATGGCTTCTAACTACTTCCTCTTGTTTGTTCTTGTTGCTGCTACTTTACTTTCTAAAGCAAATGCTAAAAAGACGTTATTTTCGGACTTCTACTCTAGCAGCTGCCTGGAACTCTTGCCTATAGTGCAAAAAGTAGTTATAAAAGCCATTAAAAATGAAACTGGCGGAGGAGCTTCCTTACTCCAATTGCTTTTCCATGACTGCTTTGTAAATGATGATACAAGCAATTTCATAGGAGAGAAAATAACAACACTTAACAATAATTCAGCAAGGGGATTCAATGTCATCGATGACATTAAAGCCAAGGTGGAGAAAGCATGCCCAAGGCTAGGGGGACCATTGTGGAAAGTAAGCTTGGGGAGAAGAGATTCTATCATAGCTAGCAGAGTTGATGCCAATAACTCCATTCCTTCACCCTTACTCAATCTAACCGCTCTCAAAAGGAGTTTCTCTAACTAG	459	0.3987	MASNYFLLFVLVAATLLSKANAKKTLFSDFYSSSCLELLPIVQKVVIKAIKNETGGGASLLQLLFHDCFVNDDTSNFIGEKITTLNNNSARGFNVIDDIKAKVEKACPRLGGPLWKVSLGRRDSIIASRVDANNSIPSPLLNLTALKRSFSN	152

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca08g01484	152	Gene3D	-	110	136	-	-
	Cca08g01484	152	PANTHER	PEROXIDASE 72-RELATED	110	151	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Cca08g01484	152	PANTHER	PEROXIDASE 72-RELATED	7	109	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Cca08g01484	152	Pfam	Peroxidase	42	152	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Cca08g01484	152	SUPERFAMILY	Heme-dependent peroxidases	26	151	IPR010255	GO:0004601\|GO:0006979\|GO:0020037
	Cca08g01484	152	PRINTS	Plant peroxidase signature	35	54	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Cca08g01484	152	PRINTS	Plant peroxidase signature	91	104	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Cca08g01484	152	PRINTS	Plant peroxidase signature	59	79	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Cca08g01484	152	PRINTS	Haem peroxidase superfamily signature	111	123	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Cca08g01484	152	PRINTS	Haem peroxidase superfamily signature	57	71	IPR002016	GO:0004601\|GO:0006979\|GO:0020037

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca08g01484	Cca-Chr8	43874018	43874724	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca08g01484	23	151	Peroxidase	AT5G05340	47.097	2.89e-39	133

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca08g01484	K00430		-	gmx:100793973	167.162

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