Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01483 ATGGAGTATACGTACGAATGCTTTAAATTGTTAGAACCTATTAAACCTATTCCGATCCCCACTGGTGGTGAGTTTCCAATTGGACAAGAGCAACTTGCTTCAATTTCAAGGGAGCATGACACTGCTGCTCTGCAGCAATATGGAGGGGTTGTAGGGCTATCGGATTTGTTGAAAACTAATTTAGAGAAGGGGGTTCATGGTGATGATGCTGACTTACTAAAGCGAAAGAATGCATTTGGTTCCAACAATTATCCTCGGAAGAAAGGAAGGGGTTTTTTGATGTTTATGTGGGATGCATGCAAGGATCTGACATTGGTTATTTTAATGATAGCTGCTGCGGCTTCATTGGCATTGGGGAAAAAATCTGAGGGTATTAATGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTATTCTTGTCATTGTTGTTACAGCTATAAGTGATTATAAGCAGTCTCTTCAGTTTCGAGACCTAAATGAAGAAAAGAGAAATATACACCTGGAGGTAATTAGAGGTGGTAGAAGGGTTGAGATCTCTATATATAATATCGTTGTTGGGGATGTTATACCCCTTAATATTGGTAACCAGGTCCCTGCTGATGGAATTCTGATCACTGGTCACAGTCTTGCAATTGATGAATCAAGTATGACAGGGGAGAGCAAAATTGTCCATAAAGATTCTAAGGATCCTTTTCTGATGTCTGGATGTAAAGTTGCAGATGGAAGTGGCACTATGCTGGTCACGGGTGTTGGTATTAATACTGAATGGGGGCTTTTAATGGCTAGCATATCAGAAGATACTGGTGAAGAAACACCATTGCAGGTTCGCTTAAATGGTGTAGCTACTTTCATCGGCATTGTTGGACTCTCTGTTGCTGTTGTTGTCTTGATTGTGCTACTGGCCAGATATTTCTCTAGGCATACTAAAAACTCAGATGGGTCAGCTCAATTTACAGCAGGCAAGACTAAAGTCGGTGATGCTATTGATGGTGCAATTAAGATAGTAACTGTTGCGGTCACCATTGTAGTGGTTGCTGTACCCGAGGGGCTCCCATTAGCAGTTTCTTTGACGCTTGCCTACTCGATGAGAAAAATGATGGCAGATAAAGCTTTGGTTAGGAGGCTTTCTGCGTGTGAGACCATGGGTTCTGCCACAACCATATGCAGTGATAAGACAGGCACATTGACTATGAATCAGATGACTGTGGTTGAGGCTTATGCTGGGGGTATGAAAATTCATCCTCCTCATAAGTTGGAGTCCTATCCTCTGCTTCGCTCTCTGCTCATTGAAGGTGTCGCTCAGAACACTACTGGCAGTGTTTATGCACCTGAGGATGCTAATGATGTCAAGGAGGTTTCTGGATCGCCAACAGAAAAGGCAATTTTACATTGGGGGTTAAAGCTTGGGATGGATTTTACGGCTGCACGATCTGAATCGTCAATTATTCATGTTTTCCCATTCAATTCAGAGAAAAAACGAGGTGGAGTTGCTTTGCAAACGTCTGACTCTGATATCCATATACACTGGAAAGGTGCTGCTGAGATAGTCCTAGCCTGCTGTACTGGGTATATTGATGGAAATGACCAACTGGTGGAAATGGATGAGGAGAAGATGACATTTTTCCGAAAAGCTATTGAAGATATGGCTGCTGATAGTTTACGTTGTGTTGCCATTGCATATAGATCATATGAAAAGGAGAAGGTTCCAACTAATGAAGATCTACTTGCTCACTGGTCTTTACCAGAAGATGATCTTATTTTACTAGCTATTGTTGGTCTTAAGGTATGTATTTCTTTAGAAACCTGCCTATCATTTGTGAGAATGGTCACTGGTGACAATGTGAAAACTGCAAAAGCAATTGCTGTGGAATGTGGAATACCATTTGCTGATGCTATGGAGCCAAACATCATTGAAGGAAAAACATTTCGTGGATTGTCAGATGCACAAAGAGATGAAATTGCTGAGAGGATTAGGATACCGGTCATGGGACGGTCATCTCCCAATGACAAACTATTGCTAGTACAATCATTGAGGAGGAAGGGTCATGTTGTGGTTGTAACCGGGGATGGGACAAATGATGCTCCTGCTCTTCATGAGGCGGATATAGGTCTTGCAATGGGTATTCAAGGTACAGAAGTTGCAAAAGAGAGCTCTGATATCATTATTTTGGATGACAATTTTTCTTCAGTTGTGAAGGTTGTCAGATGGGGCAGGTCCGTGTATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTAAATGTTGCCGCTCTTGTAATAAATGTTGTTGCTGCAGTTTCTTCTGGTGATGTCCCATTAAATGCAGTGCAGCTTCTCTGGGTAAATCTTATCATGGATACTCTGGGAGCACTAGCCCTGGCAACCGAACCACCGACTGATCACCTCATGGATCGACCTCCAGTGGATCGAAGgtactctccccacccttcgagaacagtatccgctcaataccgaagacttagaaaatcaagagaaagTAATAACAGGACGAGTGTTTCTAAGCAGGAACATATGCTTTTCAAAGAACCTCTCGTAACAAACATTATGTGGAGGAATTTGCTGATACAGAATTTTTCAGGCAATGTTCCAAGTGTCTGTCTTGCTTGTACTCAATTTCCGAGGTAG 2655 0.4102 MEYTYECFKLLEPIKPIPIPTGGEFPIGQEQLASISREHDTAALQQYGGVVGLSDLLKTNLEKGVHGDDADLLKRKNAFGSNNYPRKKGRGFLMFMWDACKDLTLVILMIAAAASLALGKKSEGINEGWYDGGSIAFAVILVIVVTAISDYKQSLQFRDLNEEKRNIHLEVIRGGRRVEISIYNIVVGDVIPLNIGNQVPADGILITGHSLAIDESSMTGESKIVHKDSKDPFLMSGCKVADGSGTMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLSVAVVVLIVLLARYFSRHTKNSDGSAQFTAGKTKVGDAIDGAIKIVTVAVTIVVVAVPEGLPLAVSLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEAYAGGMKIHPPHKLESYPLLRSLLIEGVAQNTTGSVYAPEDANDVKEVSGSPTEKAILHWGLKLGMDFTAARSESSIIHVFPFNSEKKRGGVALQTSDSDIHIHWKGAAEIVLACCTGYIDGNDQLVEMDEEKMTFFRKAIEDMAADSLRCVAIAYRSYEKEKVPTNEDLLAHWSLPEDDLILLAIVGLKVCISLETCLSFVRMVTGDNVKTAKAIAVECGIPFADAMEPNIIEGKTFRGLSDAQRDEIAERIRIPVMGRSSPNDKLLLVQSLRRKGHVVVVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFSSVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMDRPPVDRRYSPHPSRTVSAQYRRLRKSRESNNRTSVSKQEHMLFKEPLVTNIMWRNLLIQNFSGNVPSVCLACTQFPR 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01483 884 Pfam E1-E2 ATPase 168 368 - -
Cca08g01483 884 PRINTS H+-transporting ATPase (proton pump) signature 721 746 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca08g01483 884 PRINTS H+-transporting ATPase (proton pump) signature 689 705 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca08g01483 884 PRINTS H+-transporting ATPase (proton pump) signature 543 561 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca08g01483 884 Gene3D - 98 814 - -
Cca08g01483 884 Pfam Cation transport ATPase (P-type) 444 523 - -
Cca08g01483 884 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 39 815 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Cca08g01483 884 SUPERFAMILY Calcium ATPase, transduction domain A 168 263 IPR008250 -
Cca08g01483 884 Gene3D - 387 734 IPR023214 -
Cca08g01483 884 PANTHER CATION TRANSPORTING ATPASE 12 814 - -
Cca08g01483 884 SMART Cation_ATPase_N_a_2 46 120 IPR004014 -
Cca08g01483 884 SFLD p-type atpase 372 741 IPR044492 -
Cca08g01483 884 Pfam Cation transporter/ATPase, N-terminus 48 115 IPR004014 -
Cca08g01483 884 Pfam haloacid dehalogenase-like hydrolase 609 703 - -
Cca08g01483 884 Gene3D - 400 595 IPR023299 GO:0000166
Cca08g01483 884 Gene3D - 72 266 - -
Cca08g01483 884 PANTHER CALCIUM-TRANSPORTING ATPASE 12 814 - -
Cca08g01483 884 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 662 769 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca08g01483 884 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 331 412 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca08g01483 884 PRINTS P-type cation-transporting ATPase superfamily signature 604 614 - -
Cca08g01483 884 PRINTS P-type cation-transporting ATPase superfamily signature 689 708 - -
Cca08g01483 884 PRINTS P-type cation-transporting ATPase superfamily signature 214 228 - -
Cca08g01483 884 PRINTS P-type cation-transporting ATPase superfamily signature 713 725 - -
Cca08g01483 884 PRINTS P-type cation-transporting ATPase superfamily signature 390 404 - -
Cca08g01483 884 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 397 595 IPR023299 GO:0000166
Cca08g01483 884 Pfam Cation transporting ATPase, C-terminus 774 814 IPR006068 -
Cca08g01483 884 ProSitePatterns E1-E2 ATPases phosphorylation site. 392 398 IPR018303 -
Cca08g01483 884 SFLD Haloacid Dehalogenase 372 741 - -
Cca08g01483 884 SUPERFAMILY HAD-like 388 794 IPR036412 -
Cca08g01483 884 SUPERFAMILY Calcium ATPase, transmembrane domain M 49 814 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01483 Cca-Chr8 43855421 43867291 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01483 18 866 Primary Pumps ATPases AT5G57110 71.694 0.0 1209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01483 K01537 - gmx:100820121 1382.85