Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01482 ATGCTGCGTAGGGTTGAGCCATATGTTACCTATGGGTACCCTAATTTGAAGAGTGTAAGAGAATTGATCTACAAGAGGGGCTTCAGAAAAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTTTATTATTGAGGAGACTCTGGGGAAGAATGGGATCATTTGCATCGAAGATCTGATCCATGAGATAATGACTGTTGGACCTCTCTTCAGGGAGGCAAACAATTTTCTATGGCCTTTCAAGCTCAAAGCTCCCCTAGGTGGTCTTAAGAAGAAAAAAATCATTATGTTGAAGGTGGTGACGCTGGCAATAGGGAAGATTACATAA 327 0.4128 MLRRVEPYVTYGYPNLKSVRELIYKRGFRKVNKQRIALTDNFIIEETLGKNGIICIEDLIHEIMTVGPLFREANNFLWPFKLKAPLGGLKKKKIIMLKVVTLAIGKIT 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01482 108 CDD Ribosomal_L7_archeal_euk 1 88 IPR035808 -
Cca08g01482 108 Gene3D - 1 64 IPR036919 -
Cca08g01482 108 SUPERFAMILY Ribosomal protein L30p/L7e 1 96 IPR036919 -
Cca08g01482 108 PANTHER 60S RIBOSOMAL PROTEIN L7-RELATED 1 93 - -
Cca08g01482 108 PANTHER 60S RIBOSOMAL PROTEIN L7 1 93 IPR039699 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01482 Cca-Chr8 43832411 43833059 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01482 1 93 Cytoplasmic Ribosomal Protein Gene Family AT2G44120 82.796 2.25e-55 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01482 K02937 - ccaj:109798447 192.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01482 08 43832411 43833059 Cca08g01482 08 43832411 43833059 ECH