Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01481 ATGGAGTATACGTACGAATGCTTTAAATTGTTAGAACCTATTAAACCTATTCCGATCCCCACTGGTGGTGAGTTTCCAATTGGACAAGAGCAACTTGCTTCAATTTCAAGGGAGCATGACACTGCTGCTCTGCAGCAATATGGAGGGGTTGTAGGGCTATCGGATTTGTTGAAAACTAATTTAGAGAAGGGGGTTCATGGTGATGATGCTGACTTACTAAAGCGAAAGAATGCATTTGGTTCCAACAATTATCCTCGGAAGAAAGGAAGGGGTTTTTTGATGTTTATGTGGGATGCATGCAAGGATCTGACATTGGTTATTTTAATGATAGCTGCTGCGGCTTCATTGGCATTGGGGATAAAATCTGAGGGTATTAAGGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTATTCTTGTCATTGTTGTTACAGCTATAAGTGATTATAAGCAGTCTCTTCAGTTTCGAGACCTAAATGAAGAAAAGAGAAATATACACCTGGAGGTTATTAGAGGTGGTAGAAGGGTTGAGATCTCTATATATGATATTGTTGTTGGGGATGTTATACCCCTTAATATTGGTAACCAGGTCCCTGCTGATGGAATTCTGATCACTGGTCACAGTCTTGCAATTGATGAATCAAGTATGACAGGGGAGAGCAAAATTGTCCATAAAGATTCTAAGGATCCTTTTCTGATGTCTGGATGTAAAGTTGCAGATGGAAGTGGCATTATGCTGGTCACTGGTGTTGGTATTAATACTGAATGGGGGCTTTTAATGGCTAGCATATCAGAAGATACTGGTGAAGAAACACCATTGCAGGTTCGCTTAAATGGTGTAGCTACTTTCATCGGCATTGTTGGACTCTCTGTTGCTGTTGTTGTCTTGATTGTGCTACTGGCCAGATATTTCTCTGGGCATACTAAAAACTCAGATGGGTCAGCTCAATTTACAGCAGGCAAGACTAAAGTCGGTGATGCTATTGATGGTGCAATTAAGATAGTAACTGTTGCGGTCACCATTGTAGTGGTTGCTGTACCCGAGGGGCTCCCATTAGCAGTTACTTTGACGCTTGCCTACTCGATGAGAAAAATGATGGCAGATAAAGCTTTGGTTAGGAGGCTTTCTGCGTGTGAGACCATGGGTTCTGCCACAACCATATGCAGTGATAAGACAGGCACATTGACTATGAATCAGATGACTGTGGTTGAGGCTTATGCTGGGGGTATGAAAATTCATCCTCCTCATAAGTTGGAGTCCTATCCTCTGCTTCGCTCTCTGCTCATTGAAGGTGTCGCTCAGAACACTAATGGCAGTGTTTATGCACCTGAGGATGCTAATGATGTCAAGGAGGTTTCTGGATCGCCTACAGAAAAGGCAATTTTACATTGGGGGTTAAAGCTTGGGATGGATTTTACTGCTGCACGATCTGAATCGTCAATTATTCATGTTTTCCCATTCAATTCAGAGAAAAAACGAGGTGGAGTTGCTTTGCAAACGTCTGACTCTGATATCCATATACACTGGAAAGGTGCTGCTGAGATAGTCCTAGCCTGCTGTACTGGGTATATTGATGCAAATGACCAACTGGTGGAAATGGATGAGAAGATGACATTTTTCCGAAAAGCTATTGAAGATATGGCTGCTGATAGTTTACGTTGTGTTGCCATTGCATATAGATCATATGAAAAGGAGAAGGTTCCAACTAATGAAGATCTACTTGCTCACTGGTCTTTACCAGAAGATGATCTTATTTTACTAGCTATTGTTGGTCTTAAGGATCCTTGTCGTGACGGTGTCAAAGATGCTGTGCAACTTTGCCAAAAAGCTGGGGTTAAGGTGAGAATGGTCACTGGTGACAATGTGAAAACTGCAAAAGCAATTGCTGTGGAATGTGGAATACTTGGTTCATATGCTGATGCTACGGAGCCAAACATCATTGAAGGAAAAACATTTCGTGGATTGTCAGATGCACAACGAGATGAAATTGCTGATATGATATCGGTCATGGGACGGTCATCTCCCAATGACAAACTATTGCTAGTACAATCATTGAGGAGGAAGGGTCATGTTGTGGCTGTAACCGGGGATGGGACAAATGATGCTCCTGCACTTCATGAGGCGGATATAGGTCTTGCAATGGGTATTCAAGGTACAGAAGTTGCAAAAGAGAGCTCTGATATCATTATTTTGGATGACAATTTTTCTTCAGTTGTGAAGGTTGTCAGATGGGGGAGGTCCGTGTATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTAAATGTTGCCGCTCTTGTAATAAATGTTGTCGCTGCAGTTTCTTCTGGTGATGTCCCATTAAATGCAGTGCAGCTTCTCTGGGTAAATCTTATCATGGATACTCTGGGAGCACTAGCCCTGGCAACCGAACCACCGACTGATCACCTCATGGATCGACCTCCAGTGGGTCGAAGAGAACCTCTCATAACAAACATTATGTGGAGAAATTTGCTGATACAGGCAATGTACCAAGTGTCTGTCTTGCTTGTACTCAATTTCCGAGGTAGAAGCATACTGGGTCTGAGCCATGACAAGAATGACCATGCAATCAAAGTGAAAAACACTTTAATATTCAATGCATTTGTTCTCTGTCAAATATTTAATGAATTTAATGCACGAAAGCCAGATGAATACAACATATTTAAAGGAGTCACGAAAAACTACCTCTTTATGGGTATAATTGGATTGACTGTTGTGCTTCAGATTGTCATCGTTGAGTTTCTTGGGAAGTTTACTTCAACCGTTAGACTTAATTGGAAGCAGTGGCTCATCTGTGTCGTTATTGGAATAATTAGTTGGCCTCTTGCTGTGATTGGGAAATTGATACCAGTGCCAACAACTCCAATCAAGAATGTTTTTACAAAATGTGGTACTTCTGGTTCTGGAAGGAAGGAACGTGAGGAATCTCAGTAG 2964 0.4177 MEYTYECFKLLEPIKPIPIPTGGEFPIGQEQLASISREHDTAALQQYGGVVGLSDLLKTNLEKGVHGDDADLLKRKNAFGSNNYPRKKGRGFLMFMWDACKDLTLVILMIAAAASLALGIKSEGIKEGWYDGGSIAFAVILVIVVTAISDYKQSLQFRDLNEEKRNIHLEVIRGGRRVEISIYDIVVGDVIPLNIGNQVPADGILITGHSLAIDESSMTGESKIVHKDSKDPFLMSGCKVADGSGIMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLSVAVVVLIVLLARYFSGHTKNSDGSAQFTAGKTKVGDAIDGAIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEAYAGGMKIHPPHKLESYPLLRSLLIEGVAQNTNGSVYAPEDANDVKEVSGSPTEKAILHWGLKLGMDFTAARSESSIIHVFPFNSEKKRGGVALQTSDSDIHIHWKGAAEIVLACCTGYIDANDQLVEMDEKMTFFRKAIEDMAADSLRCVAIAYRSYEKEKVPTNEDLLAHWSLPEDDLILLAIVGLKDPCRDGVKDAVQLCQKAGVKVRMVTGDNVKTAKAIAVECGILGSYADATEPNIIEGKTFRGLSDAQRDEIADMISVMGRSSPNDKLLLVQSLRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFSSVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMDRPPVGRREPLITNIMWRNLLIQAMYQVSVLLVLNFRGRSILGLSHDKNDHAIKVKNTLIFNAFVLCQIFNEFNARKPDEYNIFKGVTKNYLFMGIIGLTVVLQIVIVEFLGKFTSTVRLNWKQWLICVVIGIISWPLAVIGKLIPVPTTPIKNVFTKCGTSGSGRKEREESQ 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01481 987 CDD P-type_ATPase_Ca_PMCA-like 72 830 - -
Cca08g01481 987 PRINTS Sodium/potassium-transporting ATPase signature 509 527 - -
Cca08g01481 987 PRINTS Sodium/potassium-transporting ATPase signature 383 404 - -
Cca08g01481 987 PRINTS Sodium/potassium-transporting ATPase signature 133 153 - -
Cca08g01481 987 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 397 594 IPR023299 GO:0000166
Cca08g01481 987 PANTHER CATION TRANSPORTING ATPASE 12 976 - -
Cca08g01481 987 Pfam E1-E2 ATPase 168 368 - -
Cca08g01481 987 PANTHER CALCIUM-TRANSPORTING ATPASE 12 976 - -
Cca08g01481 987 SFLD C1.7: P-type atpase like 372 749 - -
Cca08g01481 987 Gene3D - 98 953 - -
Cca08g01481 987 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 331 412 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca08g01481 987 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 664 777 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca08g01481 987 Pfam Cation transporter/ATPase, N-terminus 48 115 IPR004014 -
Cca08g01481 987 SUPERFAMILY HAD-like 388 802 IPR036412 -
Cca08g01481 987 Pfam Cation transporting ATPase, C-terminus 782 959 IPR006068 -
Cca08g01481 987 Gene3D - 72 266 - -
Cca08g01481 987 SUPERFAMILY Calcium ATPase, transduction domain A 168 263 IPR008250 -
Cca08g01481 987 SMART Cation_ATPase_N_a_2 46 120 IPR004014 -
Cca08g01481 987 ProSitePatterns E1-E2 ATPases phosphorylation site. 392 398 IPR018303 -
Cca08g01481 987 SUPERFAMILY Calcium ATPase, transmembrane domain M 49 961 IPR023298 -
Cca08g01481 987 Pfam haloacid dehalogenase-like hydrolase 387 711 - -
Cca08g01481 987 Gene3D - 387 742 IPR023214 -
Cca08g01481 987 PRINTS P-type cation-transporting ATPase superfamily signature 390 404 - -
Cca08g01481 987 PRINTS P-type cation-transporting ATPase superfamily signature 590 601 - -
Cca08g01481 987 PRINTS P-type cation-transporting ATPase superfamily signature 612 622 - -
Cca08g01481 987 PRINTS P-type cation-transporting ATPase superfamily signature 697 716 - -
Cca08g01481 987 PRINTS P-type cation-transporting ATPase superfamily signature 721 733 - -
Cca08g01481 987 PRINTS P-type cation-transporting ATPase superfamily signature 214 228 - -
Cca08g01481 987 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 39 961 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Cca08g01481 987 Gene3D - 400 597 IPR023299 GO:0000166
Cca08g01481 987 SFLD p-type atpase 372 749 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01481 Cca-Chr8 43767178 43782063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01481 18 968 Primary Pumps ATPases AT5G57110 77.778 0.0 1513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01481 K01537 - gmx:100820121 1729.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01481 08 43767178 43782063 Cca08g01481 08 43767178 43782063 ECH
Cca11g02446 11 51500671 51525226 Cca08g01481 08 43767178 43782063 PCT