Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01476 ATGGAGGAACACATAGCAATACAAGAAGCAGCTTCCGCTGGGTTCAAGAGCATGGACCATCTCATTCCACTCCTTAACCCTTCTCCTTCTCTCAACAACCTCCACTGCTCCCAAATCACCCACTTCACTGTCTCCAACTTCAAACAGCTCATCAACCTCCTCAACCGCACCGGCCACGCCCGCTTCCGCCGCGCTCCAccccagccccagccccagccccagcccTTTACTCTAGATTTCGTTAAGCCCACCATTCTGAACTCTAAGCCCAGCAACAAAGACCAAACTCTAACTCTCTccaacaccaacaccaacaccgccaccaccacctcctccctcaccaACGACGCCAGCGTCTCCGACGGCAAGATCGGCCCTTTCCTCCTCCCTCCCAAACCCCCTCTCGCCTCCTCCCACCGCAAAAAGTGCCGCGACGCCGCCCTCTCCGCCAAACACTCCTGCCACTGCTCCGGCAAAAGGAAATCACGCGTGAAACGCACCATCCGCGTCCCGGCGATAAGCTCGAAGATCGCCGATATCCCACCGGACGAATACTCGTGGAGAAAGTACGGTCAGAAGCCCATCAAGGGTTCACCCTACCCTCGTGGTTACTACAAGTGCAGCACCGTGAGAGGGTGTCCGGCGAGGAAGCACGTGGAGCGCGCGCAAGATGACCCCAAGATGCTGATAGTGACGTACGAGGGAGAGCACCGTCACGCGCTGCCGTCAACCGCCGTAGCCGGCGTCGGTTTGGGCCTTCAAACAAGTTGA 771 0.5188 MEEHIAIQEAASAGFKSMDHLIPLLNPSPSLNNLHCSQITHFTVSNFKQLINLLNRTGHARFRRAPPQPQPQPQPFTLDFVKPTILNSKPSNKDQTLTLSNTNTNTATTTSSLTNDASVSDGKIGPFLLPPKPPLASSHRKKCRDAALSAKHSCHCSGKRKSRVKRTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERAQDDPKMLIVTYEGEHRHALPSTAVAGVGLGLQTS 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01476 256 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 1 244 IPR044810 GO:0003700
Cca08g01476 256 SUPERFAMILY WRKY DNA-binding domain 179 242 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca08g01476 256 ProSiteProfiles WRKY domain profile. 176 242 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca08g01476 256 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 244 - -
Cca08g01476 256 Pfam Plant zinc cluster domain 140 179 IPR018872 -
Cca08g01476 256 Pfam WRKY DNA -binding domain 183 239 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca08g01476 256 Gene3D WRKY domain 168 243 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca08g01476 256 SMART WRKY_cls 181 241 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca08g01476 256 MobiDBLite consensus disorder prediction 87 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01476 Cca-Chr8 43679069 43680323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01476 1 239 WRKY Transcription Factor Family AT2G24570 50.172 3.19e-85 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca08g01476 WRKY 2.4e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01476 - - ccaj:109805837 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01476 08 43679069 43680323 Cca08g01476 08 43679069 43680323 ECH
Cca11g02452 11 51575459 51577115 Cca08g01476 08 43679069 43680323 PCT