Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01471 ATGGAAGATGATGAGACATGCATCACAAATCTAAGCCTTGGACTTGGAATGAGAGGGCATGTCCCAAAGAAGGAGAACCAGAGAGTGCCATGTTTGAACCTTACCTTTCACCTTTCTCCTAAAGGGGAAGAAGCCATTCACATGGTGGATCAACAACAACGTGATGATCATCATGATAAGGCAAAAGGGTTTTGTTTGAAACACCCAAATGAAATTAGTCCTGATGATAGCAACAATAGAAAGAAATTGAAGCTCACAAAAGAGCAATCAGCCACGCTCGAGGACATCTTCAAGCTTCACACCACTCTTAACCCCGCACAGAAACAGGCACTTGCTGAGCAATTGAATTTAAAGCATAGACAGGTTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACCAAGTTGAAACAAACAGAAGTGGATCGCGAGTTCCTGAAAAAATGTTATGAGAAACTAACCAATGAGAACCTAAGGCTGAAGAGGGAATTGCAAGAGCTTCGTGCACAAAACATTGGAGCAACCCCAATGTACATTCAACTCTCCAAGGCTAAAACCTTGAGCATTTGTTCATCTTGTGGGGAATTATTGAAGCCCAGTGAAGAGAACAAAGCAACCATTTCCAAGGTGATCAGAAACAGCAAACATAAATTGCAAACCAAGGTTGGGTTAGAGGGTATAATGAACTCATAA 690 0.4174 MEDDETCITNLSLGLGMRGHVPKKENQRVPCLNLTFHLSPKGEEAIHMVDQQQRDDHHDKAKGFCLKHPNEISPDDSNNRKKLKLTKEQSATLEDIFKLHTTLNPAQKQALAEQLNLKHRQVEVWFQNRRARTKLKQTEVDREFLKKCYEKLTNENLRLKRELQELRAQNIGATPMYIQLSKAKTLSICSSCGELLKPSEENKATISKVIRNSKHKLQTKVGLEGIMNS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01471 229 SMART HOX_1 78 140 IPR001356 GO:0003677
Cca08g01471 229 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981|GO:0006355
Cca08g01471 229 ProSiteProfiles 'Homeobox' domain profile. 76 136 IPR001356 GO:0003677
Cca08g01471 229 SMART halz 136 179 IPR003106 GO:0006355|GO:0043565
Cca08g01471 229 CDD homeodomain 80 137 IPR001356 GO:0003677
Cca08g01471 229 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 60 210 - -
Cca08g01471 229 PANTHER - 60 210 - -
Cca08g01471 229 Coils Coil 135 169 - -
Cca08g01471 229 Gene3D - 84 134 - -
Cca08g01471 229 Pfam Homeodomain 80 134 IPR001356 GO:0003677
Cca08g01471 229 SUPERFAMILY Homeodomain-like 69 137 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01471 Cca-Chr8 43610334 43611869 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01471 80 195 Homeobox Transcription Factor Family AT4G37790 68.966 2.15e-46 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Cca08g01471 Homeodomain 3.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01471 K09338 - gmx:100790522 312.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02459 11 51666156 51667907 Cca08g01471 08 43610334 43611869 PCT