Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01468 ATGCCCATGGATCTTAATGATGATCACACTCACCAGCTTTTCGGTACAAACCATCAAGCCTCATCATCATCTTCTCTACCTTATTCTATACTCTTCAACCAAGATCAAGATCAAGGAGGATCTTACCATGAGAAATCAAAGCACTTACAAAGTGATGAAGAGGCTGAGAAGATTGATCCTTCTGGTGGATCATGGGATCATCCGATAGAGAAAAATGATGAAAATAGAAGTGATCTCAAACAAAGGGTATGGAAGAAAAAAGATAGGTGTGAAAATCTTCAAGGTGAAGATAGTTCAAGGAAATGGATGCCTTCAAAGATCAGAATGATGCGGAAGATGATGGTGTCTGATATAAAAAGTGTCTCTAACTCTAAGCAGATCAAGTGTGAAGAGAAAAACTCACCACTATCACCTCAAGGACCTGATAATATTAACTACAGTTCTTCTTCAAATCATAGTAATATCACTGTTAGGGTTTGTGCTGATTGTCACACCACTGAGACCCCTCTCTGGAGGACCGGACCCAATGGTCCAAAGTCCCTTTGCAATGCTTGTGGGATTCGACAAAGGAAGGCAAGACGAGCCATTGCTGCAGCTGCATCAGCAAATGGAACAAGTCTTGTGGAGCCCGACAAATCTCAAGTGAAGAAGGGAAAGAAGTTGCACAAGAAAAGGATGAAGTCCAAAGCGGAGTGTGCCCCACAATTGAAAAAGAAGAGAAAACTTGGAGACAAGTATAGAAAGAGGTTTGAAAATTATGAAGATTTGACAATAAGCTTGAGTAAGAACTTGGATCTACAACAAGTTTTCCCTCAGGATGAGAAGGAGGCTGCAATCTTGCTCATGGCTTTATCTTATGGCCTACGTCGTGATTTTCCCTCGGATCATTATGTTTCTTAG 900 0.41 MPMDLNDDHTHQLFGTNHQASSSSSLPYSILFNQDQDQGGSYHEKSKHLQSDEEAEKIDPSGGSWDHPIEKNDENRSDLKQRVWKKKDRCENLQGEDSSRKWMPSKIRMMRKMMVSDIKSVSNSKQIKCEEKNSPLSPQGPDNINYSSSSNHSNITVRVCADCHTTETPLWRTGPNGPKSLCNACGIRQRKARRAIAAAASANGTSLVEPDKSQVKKGKKLHKKRMKSKAECAPQLKKKRKLGDKYRKRFENYEDLTISLSKNLDLQQVFPQDEKEAAILLMALSYGLRRDFPSDHYVS 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01468 299 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 155 194 - -
Cca08g01468 299 CDD ZnF_GATA 159 187 IPR000679 GO:0006355|GO:0043565
Cca08g01468 299 Gene3D - 153 197 IPR013088 GO:0006355|GO:0008270
Cca08g01468 299 Pfam GATA zinc finger 160 193 IPR000679 GO:0006355|GO:0043565
Cca08g01468 299 ProSiteProfiles GATA-type zinc finger domain profile. 158 190 IPR000679 GO:0006355|GO:0043565
Cca08g01468 299 MobiDBLite consensus disorder prediction 1 82 - -
Cca08g01468 299 ProSitePatterns GATA-type zinc finger domain. 160 185 IPR000679 GO:0006355|GO:0043565
Cca08g01468 299 SMART GATA_3 154 206 IPR000679 GO:0006355|GO:0043565
Cca08g01468 299 MobiDBLite consensus disorder prediction 40 82 - -
Cca08g01468 299 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 289 - -
Cca08g01468 299 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 1 289 - -
Cca08g01468 299 MobiDBLite consensus disorder prediction 123 150 - -
Cca08g01468 299 MobiDBLite consensus disorder prediction 10 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01468 Cca-Chr8 43548249 43550295 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01468 72 288 C2C2-Gata Transcription Factor Family AT4G26150 39.662 3.69e-30 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Cca08g01468 GATA 7e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01468 - - gmx:100780875 382.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01468 08 43548249 43550295 Cca08g01468 08 43548249 43550295 ECH
Cca11g02470 11 51819788 51821658 Cca08g01468 08 43548249 43550295 PCT