Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01448 ATGTCCTTCAAAATAGGCTCCGCCGCAACGTCCACCTCTTCCGAGCCAATATACAGTAGCCCTGCCATGGGCGGCACCAACGCCAACTTCGACGACAAGGAGCTGCTCCTGGACGACCTCGAGATCCACCTAGAGCAAATCCGGAGCAAAATCAGATCCGTACTGAACCTATTTCGGGTGAACCAATTCTTCGAGCAACTCGACAAGATTCGCGAGGTCGTCGTCATCATCGATAAGAACACCAGCCGATCCAAGGGCTATGGTTTTGTGACTTTCTGGGATCCCGAGGCTACAAGGACAGCGTGTGCTGATCCAATTGATGGAAGAAGAGCCAATTGTAACTTAGATTCACTTGGTCGACTACGGCCTCTGTCTTATGATGTTACTATAGGTGATTAA 399 0.5013 MSFKIGSAATSTSSEPIYSSPAMGGTNANFDDKELLLDDLEIHLEQIRSKIRSVLNLFRVNQFFEQLDKIREVVVIIDKNTSRSKGYGFVTFWDPEATRTACADPIDGRRANCNLDSLGRLRPLSYDVTIGD 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01448 132 PANTHER BOULE-RELATED 61 122 IPR037366 GO:0003729
Cca08g01448 132 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 129 IPR000504 GO:0003723
Cca08g01448 132 Coils Coil 30 57 - -
Cca08g01448 132 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 61 101 IPR000504 GO:0003723
Cca08g01448 132 Gene3D - 58 123 IPR012677 -
Cca08g01448 132 MobiDBLite consensus disorder prediction 1 23 - -
Cca08g01448 132 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 61 122 - -
Cca08g01448 132 SUPERFAMILY RNA-binding domain, RBD 61 116 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01448 Cca-Chr8 43024677 43025457 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01448 64 117 C2H2 Transcription Factor Family AT2G19380 42.105 2.96e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01448 - - oeu:111393250 99.3673