Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01440 ATGCACCCCATGGAAAGTGTCTTCTCTCTCCCTGTAGCCGCCAGAACTGATTTTATCCAATTCCTGGTGCAGTCTTTTGGCTGCAGTTACATTTGTCTATGGACATGTGATTCCATTAATTCACCAAATCGTTTGTGCTTCTTGGATGGTTTCTACAATGTAAGAAACGACCAACCAAGCTCTACTTCGGGGACTGTGGCACAGCAACTATTCAGCCAGTTCCGGACTTTAACATTTGATGTCAATGATGACCGTGTTCCTGGACTTGCTTTTAGAAACCAGCGTCCCTACCTAGAGCTTCAACAATTGGAACTTCTGAGACTAGCATCCACAGAAATTCAAACACAATTCTTTCAGACTGCTGTTTTCATGGGGTGTAACAAAGGGGAAATTGAGCTTGGTTTCTTAAACATGTCCCAAGTTGACATTCAAACAGCACTTAGGAGTTTGTTTCCTGAAGATTTCTCTAGACAGTCCCAACAAATTGATCAAAACAACCCACCTACATCATCTTCATCTTCTTTGAGATCATTATCCACAGGTAGCCCTGAATACTCATCTCTTCTGTTCAGCATCCCAGGCACTTCTCAGACACACTTTCCTGAGACCCTTGGAAGAGTAGTGCCCCCAATGCAGCCAGTGCCAAACACTGCTACTAGTACCATTGATCAAACATTGGCACAAGTCCCTCTAACCCAATTCCCCACACAAGAAACTGAACATGATGCAATCATGAGAGCAATCCTCCATGTTATATCTCCAACTTCTCATCAGCATCATCAAAACTTGCCTTATGTGGTGCATCCAGAAGCTAGTGCTTTCCAGAGGTATAGGCCAGACATAGGTCCCAATATGGCGTCCAATTTCAGAAGGCAAAGCCTGATGAAGAGATCTTTTGCATTCTTTAAAAACTTGAATTTCATGAGAATGAGAGAACGCATTCAAGCAACGTCACGTCCCACTAATACTCAGCTCCATCATATGATATCAGAGAGAAGAAGGCGTGAGAAAATAAACGAGAATTTCCAAGCTCTTAGAGCACTACTTCCTCCAGGAACCAAGAAAGACAAAGCATCTATACTAATAGCAGCAAAGGAGACATTGAGCTCTTTGGTGGCTGAAGTTGATAAACTAAGCAAAAGGAATCAGGGCTTGACGTCACTTTTGCCAGCAAAAGAATCTTCAACTGAAGAAACCAAGGTTGGTTTATCATCAAATGAAAGAGTAAATGTTCGACTTTCACATGTTCCGGAATCAAGCTCATCAGAAGAGCGAATGGTGGACTTGCAAGTGAATGTGAGAGGACAAATTTCTCAAATTGATTTGTTAATTCGCATATTGGAATTCTTAAAACGTTCTCACCACATGAGCTTGGTTTCCATGGACGCAAACACCCACATTGCAGAAGGGAATAATGCTCTTCAACAACTAACCTTCAGATTAAGGATCATTCAGGGAAGTGAGTGGGACGAGTCTGCCTTCGAGGAAGCAGTGAGAAGAGTGGTTGCTGACTTGGCACAGTATCAAGTTGACCAATAA 1539 0.4256 MHPMESVFSLPVAARTDFIQFLVQSFGCSYICLWTCDSINSPNRLCFLDGFYNVRNDQPSSTSGTVAQQLFSQFRTLTFDVNDDRVPGLAFRNQRPYLELQQLELLRLASTEIQTQFFQTAVFMGCNKGEIELGFLNMSQVDIQTALRSLFPEDFSRQSQQIDQNNPPTSSSSSLRSLSTGSPEYSSLLFSIPGTSQTHFPETLGRVVPPMQPVPNTATSTIDQTLAQVPLTQFPTQETEHDAIMRAILHVISPTSHQHHQNLPYVVHPEASAFQRYRPDIGPNMASNFRRQSLMKRSFAFFKNLNFMRMRERIQATSRPTNTQLHHMISERRRREKINENFQALRALLPPGTKKDKASILIAAKETLSSLVAEVDKLSKRNQGLTSLLPAKESSTEETKVGLSSNERVNVRLSHVPESSSSEERMVDLQVNVRGQISQIDLLIRILEFLKRSHHMSLVSMDANTHIAEGNNALQQLTFRLRIIQGSEWDESAFEEAVRRVVADLAQYQVDQ 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01440 512 CDD bHLH_AtbHLH_like 327 379 IPR045239 -
Cca08g01440 512 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 322 371 IPR011598 GO:0046983
Cca08g01440 512 SMART finulus 328 377 IPR011598 GO:0046983
Cca08g01440 512 Coils Coil 361 381 - -
Cca08g01440 512 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 322 386 IPR036638 GO:0046983
Cca08g01440 512 Gene3D - 321 396 IPR036638 GO:0046983
Cca08g01440 512 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 4 505 IPR044658 -
Cca08g01440 512 MobiDBLite consensus disorder prediction 156 180 - -
Cca08g01440 512 Pfam Helix-loop-helix DNA-binding domain 326 371 IPR011598 GO:0046983
Cca08g01440 512 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 4 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01440 Cca-Chr8 42719230 42723446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01440 15 507 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 41.966 3.83e-101 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca08g01440 HLH 1.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01440 - - gmx:100807098 811.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01440 08 42719230 42723446 Cca08g01440 08 42719230 42723446 ECH
Cca11g02484 11 52019401 52020942 Cca08g01440 08 42719230 42723446 PCT