Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01434 ATGATGCACTTGAGAAGTGGGTTTTGGGATTCAAACGATGTTAGCAACAGCAGTGCAAGTGGGTCAGAGGTAACGCCGCTGAGGCTTCTGTCCCAGAATCTGAGTTCCCTACTAGAGGTCAGTGCCGGGGGGGTTGACTTTTTCTCCGACGGGAGGATCGCAGTCGCGGACGGCAGGGAAGTGGCCGTGCACCGCTGCATTCTGGCGGCGAGGAGCTGCTTCTTCAAGGAGGCGTTTGCGGCTGGCGGCGTGCTCCGGTTGAAGGACGTGGCCAAGGACTACGATGTGGGGCTAGAAGCGCTTTTCACGGTTCTTGTTTATTTGTACAGTGGGAGGGTGAAGCCTTTGCCCCAAGGCCGTGTTTGTGAGTGTGTGGATGATGCGTGTTTGCATTTTGGGTGTAGGCCTGCTGTGGATTTCTTGCTTCAGCTTCTTTATGCTTCCTCAACTTTTCAATTATCCCACTTGGTTACTCTTTATCAGGGGCATCTACTAGACATTCTTGATAAGGTACAAATAGATGACATTTTGGTGGTTCTATCCGTGGCAAACATATGTGGCAAAATGTGTGATAAATTGCTAGCAAGGTGTACTGAGATGATAGTTAAATCTGATGTTGATATCACCACTCTTGAAAAGTCGCTGCCTCAACTTGTGGTGAAACAAATCATGGATACACGAAGAGAATTGGGCTTGTTCATGCCTCAAAACTTCAATTTTTCTGATAAACATGTTAACAGAATACACAGAGCACTTGATTCGGACGATGTGGAGTTAGTAAGGTTGCTTTTGAAAGAGGGGCACACCACTCTTGATGATGCCTATGCACTTCACTATGCTGTTGCATACTGTGATGTGAAGACCACCACTGAGCTTCTTGATCTTGGTCTTGCTGATGTCAACCACAAAAACCATAGGGGCTATAGTGTGTTGCACGTTGCTGCAATGAGGAAAGAGCCCAAGATTATAGTTTCTCTCTTGACAAAGGGAGCACAACCTTCTGATCTTACTCTGGATGGAAGAAAGGCCCTTCAGATTTCAAAGCGTCTCGCAAAAGCTGTGGATTATTATAAGTCCACAGAGGAAGGAAAGGTATCATGCAATGACAGATTGTGCATAGAGATATTGGAGCAAGCTGAGAGAAGGGAACCTATACTTGGAGAGGCATCACTTTCTCTTGCTATGGCAGGGGATGATTTACGGATGAAATTGTTGTACCTAGAAAATAGAGTTGGACTGGCTGAAGTTTTGTTTCCCATGGAAGCAAAGGTTATTATGGACATATCTCAAATTGATGGCACATCTGAATTTCCATCGTCAGACATCTACTGTCCAAATATCAACGATCACCATAGGACAACTGTGGACTTAAACGATGCACCTTTCAGAATGAAGGAAGAGCATCTAGTTAGGTTGAGAGCACTGTCTAGAACTGTGGAATTGGGAAAACGCTTCTTCCCTCGTTGCTCAGAAGTGTTGAATAAGATCATGGATGCTGATGACCTATCTCAGCTCACATGTATGGGTGATGATAGTCCTGAAGATCGACTAAGGAAGAGAGGAAGATATGTTGAACTTCAAGAAGTTCTGAATAAGGTCTTCAATGAGGACAAGGAGGAGTTTGATAGGTCTGCCATGTCATCATCATCCTCTTCCACATCAATGGGAGTAGTGAGAGCAAATGGCAATCTACCCATGAAGAACTAG 1707 0.4523 MMHLRSGFWDSNDVSNSSASGSEVTPLRLLSQNLSSLLEVSAGGVDFFSDGRIAVADGREVAVHRCILAARSCFFKEAFAAGGVLRLKDVAKDYDVGLEALFTVLVYLYSGRVKPLPQGRVCECVDDACLHFGCRPAVDFLLQLLYASSTFQLSHLVTLYQGHLLDILDKVQIDDILVVLSVANICGKMCDKLLARCTEMIVKSDVDITTLEKSLPQLVVKQIMDTRRELGLFMPQNFNFSDKHVNRIHRALDSDDVELVRLLLKEGHTTLDDAYALHYAVAYCDVKTTTELLDLGLADVNHKNHRGYSVLHVAAMRKEPKIIVSLLTKGAQPSDLTLDGRKALQISKRLAKAVDYYKSTEEGKVSCNDRLCIEILEQAERREPILGEASLSLAMAGDDLRMKLLYLENRVGLAEVLFPMEAKVIMDISQIDGTSEFPSSDIYCPNINDHHRTTVDLNDAPFRMKEEHLVRLRALSRTVELGKRFFPRCSEVLNKIMDADDLSQLTCMGDDSPEDRLRKRGRYVELQEVLNKVFNEDKEEFDRSAMSSSSSSTSMGVVRANGNLPMKN 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01434 568 Gene3D Potassium Channel Kv1.1; Chain A 12 203 IPR011333 -
Cca08g01434 568 Pfam NPR1/NIM1 like defence protein C terminal 348 553 IPR021094 -
Cca08g01434 568 ProSiteProfiles Ankyrin repeat profile. 306 338 IPR002110 GO:0005515
Cca08g01434 568 SMART ANK_2a 272 302 IPR002110 GO:0005515
Cca08g01434 568 SMART ANK_2a 306 335 IPR002110 GO:0005515
Cca08g01434 568 SMART ANK_2a 243 271 IPR002110 GO:0005515
Cca08g01434 568 Pfam Ankyrin repeats (many copies) 276 320 IPR002110 GO:0005515
Cca08g01434 568 Pfam BTB/POZ domain 47 137 IPR000210 GO:0005515
Cca08g01434 568 CDD BTB_POZ_NPR_plant 46 168 - -
Cca08g01434 568 PANTHER REGULATORY PROTEIN NPR2 15 565 - -
Cca08g01434 568 Pfam Domain of unknown function (DUF3420) 205 249 IPR024228 -
Cca08g01434 568 MobiDBLite consensus disorder prediction 545 559 - -
Cca08g01434 568 PANTHER REGULATORY PROTEIN NPR3 15 565 IPR044292 GO:0009862|GO:2000022|GO:2000031
Cca08g01434 568 MobiDBLite consensus disorder prediction 1 21 - -
Cca08g01434 568 Gene3D - 227 379 IPR036770 -
Cca08g01434 568 MobiDBLite consensus disorder prediction 544 568 - -
Cca08g01434 568 ProSiteProfiles BTB domain profile. 49 117 IPR000210 GO:0005515
Cca08g01434 568 SUPERFAMILY Ankyrin repeat 242 348 IPR036770 -
Cca08g01434 568 SMART BTB_4 49 168 IPR000210 GO:0005515
Cca08g01434 568 SUPERFAMILY POZ domain 46 165 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01434 Cca-Chr8 42647302 42650161 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Cca08g01434 NPR1_like_C 1.2e-86 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01434 K14508 - gmx:100800032 925.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01434 08 42647302 42650161 Cca08g01434 08 42647302 42650161 ECH