Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01429 ATGGAACCTCGCGTTGGGAATAAGTTTCGGCTTGGCCGTAAGATCGGTAGCGGATCGTTTGGAGAGATCTATTTAGGTACTAATATTCAAACTAATGAAGAGGTTGCAATTAAGCTTGAAAATGTCAAGACAAAGCATCCTCAGTTGCTTTATGAGTCCAAATTGTACAGAGTTCTCCAGGGAGGAACTGGAATTCCGGATGTTAGATGGTTCGGAGTGGAGGGAGATTACAATGTTCTAGTGATGGATCTGCTTGGACCTAGTCTTGAAGATCTATTTAACTTCTGCAGTAGAAAGCTCTCACTAAAGACAGTTCTCATGCTTGCTGATCAAATGCTCAACCGCGTTGAGTTTGTTCATACTAAATCGTTTCTACATCGGGATATTAAACCAGATAATTTCCTCATGGGCTTGGGAAGGCGGGCAAACCAGGTTTACTGTATTGATTTCGGTTTGGCAAAGAAATACAGAGATAGTTCAACCCATCAACACATTCCTTACAGGGAAAACAAGAATTTAACTGGGACTGCTAGATATGCGAGTATGAATACCCACCTTGGCATTGAGCAAAGTAGAAGAGATGATTTGGAGTCTCTTGGTTTTGTCTTGATGTATTTCTTGAGAGGAAGTCTCCCTTGGCAAGGACTTAAAGCAGGAACCAAGAAACAGAAGTACGATAGAATCAGTGAAAAAAAGGTTTCTACCTCGATTGAGGCCTTGTGTCGAGGTTATCCAACAGAATTTGCATCATACTTCCATTACTGCCGCTCATTAAGGTTTGATGATAGGCCAGATTATGCTTACCTCAAAAGAATATTTCGAGACCTGTTTATTCGTGAAGGTGTGAAATTAATCTCATATAAAGTGCATCACTTTTGTCTAAGTGCTCGAGTTTATCATGTATATACTTTATTGTATGATTTTCTTTACAATCTATGA 939 0.3972 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRVLQGGTGIPDVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMLNRVEFVHTKSFLHRDIKPDNFLMGLGRRANQVYCIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGFVLMYFLRGSLPWQGLKAGTKKQKYDRISEKKVSTSIEALCRGYPTEFASYFHYCRSLRFDDRPDYAYLKRIFRDLFIREGVKLISYKVHHFCLSARVYHVYTLLYDFLYNL 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01429 312 CDD STKc_CK1_delta_epsilon 8 281 - -
Cca08g01429 312 PANTHER CASEIN KINASE 1-LIKE PROTEIN 2 1 284 IPR030509 GO:0004672|GO:0005524
Cca08g01429 312 PANTHER CASEIN KINASE-RELATED 1 284 - -
Cca08g01429 312 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01429 312 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Cca08g01429 312 Gene3D Transferase(Phosphotransferase) domain 1 1 291 - -
Cca08g01429 312 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01429 312 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Cca08g01429 312 SUPERFAMILY Protein kinase-like (PK-like) 5 282 IPR011009 -
Cca08g01429 312 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01429 Cca-Chr8 42557013 42563571 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01429 7 223 EF-hand Containing Proteins AT2G17890 25.778 1.78e-12 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Cca08g01429 Pkinase 9.4e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01429 K02218 - gmx:100786777 563.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01429 08 42557013 42563571 Cca08g01429 08 42557013 42563571 ECH
Cca11g02490 11 52068655 52082123 Cca08g01429 08 42557013 42563571 PCT